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Report for CCDS27174.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27174.1 Public Mus musculus 14 Atp8a2 23 108 98 CCDS HistoryNCBI Gene:50769Re-query CCDS DB by CCDS ID:27174.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27174.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080368.12 ENSMUSP00000079238.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080368.12Link to Ensembl Protein Viewer:ENSMUSP00000079238.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080368Re-query CCDS DB by Protein ID:ENSMUSP00000079238
Original member Current member NCBI NM_015803.3 NP_056618.1 Accepted alive Link to Nucleotide Sequence:NM_015803.3Link to Protein Sequence:NP_056618.1Re-query CCDS DB by Nucleotide ID:NM_015803Re-query CCDS DB by Protein ID:NP_056618Link to BLAST:NP_056618.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056618.1 1148 P98200 1148 100% 0 0

Chromosomal Locations for CCDS 27174.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 59647827 59647924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59654549 59654640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59684915 59685019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59691452 59691540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59771639 59771746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59773701 59773757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59773961 59774022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59791181 59791259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59793867 59793989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59802244 59802318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59857029 59857139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59860130 59860313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59925007 59925179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59998001 59998065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60006229 60006367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60008355 60008494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60009803 60009887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60012379 60012448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60015874 60015923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60016789 60016871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60017560 60017665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60020759 60020834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60023123 60023167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60023449 60023537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60026141 60026218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60026925 60027052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60027949 60028114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60033710 60033821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60035185 60035312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60036968 60037037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60038974 60039047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60044317 60044357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60044968 60045013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60046004 60046102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60046661 60046760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60086582 60086682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3447 nt):
ATGTCCCGGGCCACGTCTGTTGGAGACCAGCTAGAGGCACCGGCCCGCATAATTTACCTCAACCAATCTC
ATCTCAACAAATTCTGCGACAACCGGATCAGTACGGCCAAGTACAGCGTGTTGACATTTCTACCTCGATT
CCTGTATGAGCAGATTAGGAGAGCTGCTAACGCCTTCTTCCTCTTCATTGCCTTATTACAGCAAATCCCA
GACGTCTCACCAACAGGACGGTACACCACCCTGGTGCCCTTGGTCATCATTCTAACGATTGCAGGCATCA
AAGAGATCATAGAAGATTTTAAACGACATAAGGCAGACAATGCAGTTAACAAGAAGAAAACAATAGTGTT
AAGAAATGGCATGTGGCACACTATCATGTGGAAAGAGGTGGCAGTGGGAGACATCGTGAAGGTCCTCAAT
GGGCAGTATCTTCCAGCAGACATGGTCCTGTTCTCCTCCAGTGAGCCCCAGGGGATGTGCTATGTTGAAA
CTGCTAACCTGGATGGCGAGACGAACCTTAAAATACGACAGGGCTTGAGCCACACAACCGACATGCAGAC
GAGGGACGTGCTCATGAAGCTGTCGGGAAGGATAGAGTGTGAAGGGCCCAACCGCCACCTCTACGACTTC
ACCGGCAACCTGCACTTGGATGGGAAGAGCTCCGTTGCCCTTGGACCTGACCAGATCCTTCTGAGAGGCA
CCCAGCTCAGGAACACACAGTGGGTCTTCGGCGTCGTTGTGTACACTGGACATGACAGCAAGCTCATGCA
GAATTCAACAAAAGCACCTCTCAAGAGATCAAATGTTGAGAAGGTAACCAACGTGCAGATCCTGGTGCTG
TTTGGTATCCTCCTGGTCATGGCGCTGGTGAGCTCTGTGGGGGCCCTGTTCTGGAATGGGTCTCATGGCG
GAAAGAGTTGGTACATCAAGAAGATGGACACGAACTCAGATAATTTTGGCTACAACTTGCTAACGTTTAT
CATCTTGTACAACAATCTGATTCCTATCAGCCTGCTGGTGACACTTGAGGTTGTGAAATACACGCAAGCC
CTCTTCATAAACTGGGACATGGATATGTATTATATTGAAAATGACACTCCTGCAATGGCCAGGACATCAA
ACCTCAACGAAGAGCTGGGGCAGGTAAAATACCTGTTTTCAGACAAGACTGGAACTCTTACATGTAATAT
CATGAACTTCAAGAAGTGTAGCATTGCTGGTGTGACCTATGGCCACTTCCCGGAACTAGCCAGAGAGCAG
TCCTCAGATGACTTCTGCCGGATGACTTCTTGTACCAATGACTCATGTGACTTCAATGATCCCAGGCTGT
TAAAGAACATCGAGGATCAGCACCCTACAGCCCCTTGCATACAAGAGTTCCTTACCCTGCTGGCTGTGTG
TCACACCGTCGTCCCCGAGAAGGATGGAGATGAAATTATCTACCAAGCCTCGTCCCCAGATGAAGCTGCT
TTGGTCAAAGGAGCTAAGAAGCTTGGCTTTGTGTTTACCGGGAGGACGCCGTACTCGGTCATCATCGAAG
CGATGGGACAAGAACAGACATTCGGGATCCTCAATGTTCTAGAATTTTCTAGTGACAGGAAAAGAATGTC
TGTCATTGTCCGACTGCCATCAGGACAACTTCGACTCTACTGCAAGGGAGCCGATAACGTCATCTTTGAA
AGACTCTCAAAGGACTCAAAGTACATGGAGGAGACGCTATGCCATCTGGAATATTTTGCCACAGAAGGCC
TGCGGACTCTGTGCGTGGCCTACGCAGACCTTTCTGAGAATGAGTATGAGGAGTGGCTGAAAGTCTATCA
AGAGGCCAGCATCATTCTGAAGGACAGAGCCCAGAGGCTGGAAGAGTGTTACGAGATCATTGAGAAGAAT
TTACTGTTACTTGGAGCTACAGCCATCGAAGACCGTCTTCAAGCCGGCGTTCCAGAAACCATAGCCACTC
TGCTGAAGGCAGAAATCAAAATCTGGGTGTTGACAGGAGACAAACAAGAAACTGCAATTAATATCGGGTA
TTCCTGTCGGTTGGTGTCGCAGAACATGGCCCTTATCCTATTGAAGGAGGACTCTTTAGATGCAACAAGG
GCGGCCATCACTCAGCACTGCACAGATCTTGGAAATTTGCTGGGCAAAGAGAACGATGTGGCCCTCATCA
TCGATGGCCATACCCTGAAGTATGCACTCTCCTTTGAAGTCCGCAGAAGTTTCCTGGACCTGGCGCTCTC
ATGCAAAGCTGTCATCTGCTGCAGAGTGTCCCCTCTGCAGAAGTCTGAGATCGTGGATGTTGTGAAGAAG
CGAGTGAAAGCCATCACCCTGGCCATCGGAGACGGTGCCAATGACGTGGGGATGATCCAGACAGCCCACG
TAGGGGTCGGGATCAGCGGGAACGAGGGAATGCAGGCTACCAACAACTCAGATTATGCCATCGCACAGTT
TTCCTACCTGGAGAAGCTGCTTTTGGTCCACGGAGCCTGGAGCTACAACCGGGTGACCAAGTGTATCCTG
TACTGTTTCTACAAGAATGTGGTCCTCTACATCATCGAGCTATGGTTCGCCTTTGTGAATGGATTTTCTG
GGCAGATTTTATTCGAGCGCTGGTGCATCGGCTTGTACAATGTGATCTTCACGGCATTGCCGCCCTTCAC
TCTGGGGATCTTCGAGAGGTCTTGTACTCAGGAGAGCATGCTCAGGTTCCCACAGCTTTACAGAATCACT
CAGAACGCTGAAGGTTTCAACACTAAGGTTTTCTGGGGTCACTGCATCAATGCCTTGGTTCATTCCCTCA
TCCTCTTCTGGGTTCCCATGAAAGCGCTGGAGCATGATACTCCAGTAACCAGCGGTCATGCCACAGACTA
TTTGTTTGTTGGAAATATTGTTTACACGTACGTTGTGGTTACAGTTTGTTTGAAAGCTGGTTTGGAGACG
ACAGCTTGGACGAAATTCAGTCACCTGGCGGTGTGGGGAAGCATGCTGATCTGGTTGGTGTTCTTCGGTG
TCTATTCAACCATCTGGCCGACCATCCCCATTGCTCCTGACATGAAAGGGCAGGCAACTATGGTCCTGAG
CTCTGCGTACTTCTGGTTGGGATTGTTCCTGGTTCCGACTGCGTGTTTGATTGAAGACGTGGCGTGGAGA
GCGGCCAAGCACACCTGCAAAAAGACTCTGCTGGAGGAGGTGCAGGAGCTGGAGACCAAGTCCCGAGTGA
TGGGCAAGGCGATGCTTCGAGACAGTAACGGAAAGAGGATGAACGAGCGTGACCGTCTGATCAAGAGGCT
CAGCAGGAAGACACCTCCAACCCTCTTCCGAACAGGCTCCATCCAGCAGTGTGTCAGCCATGGGTATGCC
TTTTCTCAAGAAGAGCATGGAGCTGTTACACAGGAGGAAATAGTCCGCGCTTATGATACCACCAAAGAGA
ATTCAAGGAAGAAATAA

Translation (1148 aa):
MSRATSVGDQLEAPARIIYLNQSHLNKFCDNRISTAKYSVLTFLPRFLYEQIRRAANAFFLFIALLQQIP
DVSPTGRYTTLVPLVIILTIAGIKEIIEDFKRHKADNAVNKKKTIVLRNGMWHTIMWKEVAVGDIVKVLN
GQYLPADMVLFSSSEPQGMCYVETANLDGETNLKIRQGLSHTTDMQTRDVLMKLSGRIECEGPNRHLYDF
TGNLHLDGKSSVALGPDQILLRGTQLRNTQWVFGVVVYTGHDSKLMQNSTKAPLKRSNVEKVTNVQILVL
FGILLVMALVSSVGALFWNGSHGGKSWYIKKMDTNSDNFGYNLLTFIILYNNLIPISLLVTLEVVKYTQA
LFINWDMDMYYIENDTPAMARTSNLNEELGQVKYLFSDKTGTLTCNIMNFKKCSIAGVTYGHFPELAREQ
SSDDFCRMTSCTNDSCDFNDPRLLKNIEDQHPTAPCIQEFLTLLAVCHTVVPEKDGDEIIYQASSPDEAA
LVKGAKKLGFVFTGRTPYSVIIEAMGQEQTFGILNVLEFSSDRKRMSVIVRLPSGQLRLYCKGADNVIFE
RLSKDSKYMEETLCHLEYFATEGLRTLCVAYADLSENEYEEWLKVYQEASIILKDRAQRLEECYEIIEKN
LLLLGATAIEDRLQAGVPETIATLLKAEIKIWVLTGDKQETAINIGYSCRLVSQNMALILLKEDSLDATR
AAITQHCTDLGNLLGKENDVALIIDGHTLKYALSFEVRRSFLDLALSCKAVICCRVSPLQKSEIVDVVKK
RVKAITLAIGDGANDVGMIQTAHVGVGISGNEGMQATNNSDYAIAQFSYLEKLLLVHGAWSYNRVTKCIL
YCFYKNVVLYIIELWFAFVNGFSGQILFERWCIGLYNVIFTALPPFTLGIFERSCTQESMLRFPQLYRIT
QNAEGFNTKVFWGHCINALVHSLILFWVPMKALEHDTPVTSGHATDYLFVGNIVYTYVVVTVCLKAGLET
TAWTKFSHLAVWGSMLIWLVFFGVYSTIWPTIPIAPDMKGQATMVLSSAYFWLGLFLVPTACLIEDVAWR
AAKHTCKKTLLEEVQELETKSRVMGKAMLRDSNGKRMNERDRLIKRLSRKTPPTLFRTGSIQQCVSHGYA
FSQEEHGAVTQEEIVRAYDTTKENSRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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