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Report for CCDS3044.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3044.1 Public Homo sapiens 3 PODXL2 24 110 108 CCDS HistoryNCBI Gene:50512Re-query CCDS DB by CCDS ID:3044.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3044.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342480.7 ENSP00000345359.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342480.7Link to Ensembl Protein Viewer:ENSP00000345359.6Re-query CCDS DB by Nucleotide ID:ENST00000342480Re-query CCDS DB by Protein ID:ENSP00000345359
Original member Current member NCBI NM_015720.4 NP_056535.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015720.4Link to Protein Sequence:NP_056535.1Re-query CCDS DB by Nucleotide ID:NM_015720Re-query CCDS DB by Protein ID:NP_056535Link to BLAST:NP_056535.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056535.1 605 Q9NZ53-1 605 100% 0 0

Chromosomal Locations for CCDS 3044.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 127629220 127629289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127639245 127639523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127660378 127661159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127662237 127662311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127668441 127668597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127669141 127669202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127671434 127671613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127672268 127672480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1818 nt):
ATGGGCCGGCTGCTGCGGGCCGCCCGGCTGCCGCCGCTGCTTTCGCCGCTGCTGCTTCTGCTGGTTGGGG
GA
GCGTTCCTGGGTGCCTGTGTGGCTGGGTCTGATGAGCCTGGCCCAGAGGGCCTCACCTCCACCTCCCT
G
CTAGACCTCCTGCTGCCCACTGGCTTGGAGCCACTGGACTCAGAGGAGCCTAGTGAGACCATGGGCCTG
GGA
GCTGGGCTGGGAGCCCCTGGCTCAGGCTTCCCCAGCGAAGAGAATGAAGAGTCTCGGATTCTGCAGC
CA
CCACAGTACTTCTGGGAAGAGGAGGAAGAGCTGAATGACTCAAGTCTGGACCTGGGACCCACTGCAGA
T
TATGTTTTTCCTGACTTAACTGAGAAGGCAGGTTCCATTGAAGACACCAGCCAGGCTCAAGAGCTGCCA
AAC
CTCCCCTCTCCCTTGCCCAAGATGAATCTGGTTGAGCCTCCCTGGCATATGCCTCCCAGAGAGGAGG
AA
GAAGAGGAAGAGGAAGAGGAGGAGAGGGAGAAGGAAGAGGTAGAGAAACAAGAGGAGGAGGAAGAGGA
G
GAGCTGCTCCCTGTGAATGGATCCCAAGAAGAAGCCAAGCCTCAGGTCCGTGACTTTTCTCTCACCAGC
AGC
AGCCAGACCCCAGGGGCCACCAAAAGCAGGCATGAAGACTCCGGGGACCAGGCCTCATCAGGTGTGG
AG
GTGGAGAGCAGCATGGGGCCCAGCTTGCTGCTGCCTTCAGTCACCCCAACTACAGTGACTCCGGGGGA
C
CAGGACTCCACCAGCCAAGAGGCAGAGGCCACAGTGCTGCCAGCTGCAGGGCTTGGGGTAGAGTTCGAG
GCT
CCTCAGGAAGCAAGCGAGGAAGCCACTGCAGGAGCAGCTGGTTTGTCTGGCCAGCACGAGGAGGTGC
CG
GCCTTGCCTTCATTCCCTCAAACCACAGCTCCCAGTGGGGCCGAGCACCCAGATGAAGATCCCCTTGG
C
TCTAGAACCTCAGCCTCTTCCCCACTGGCCCCTGGAGACATGGAACTGACACCTTCCTCTGCTACCTTG
GGA
CAAGAAGATCTCAACCAGCAGCTCCTAGAAGGGCAGGCAGCTGAAGCTCAATCCAGGATACCCTGGG
AT
TCTACGCAGGTGATCTGCAAGGACTGGAGCAATCTGGCTGGGAAAAACTACATCATTCTGAACATGAC
A
GAGAACATAGACTGTGAGGTGTTCCGGCAGCACCGGGGGCCACAGCTCCTGGCCCTGGTGGAAGAGGTG
CTG
CCCCGCCATGGCAGTGGCCACCATGGGGCCTGGCACATCTCTCTGAGCAAGCCCAGCGAGAAGGAGC
AG
CACCTTCTCATGACACTGGTGGGCGAGCAGGGGGTGGTGCCCACTCAAGATGTCCTTTCCATGCTGGG
T
GACATCCGCAGGAGCCTGGAGGAGATTGGCATCCAGAACTATTCCACAACCAGCAGCTGCCAGGCGCGG
GCC
AGCCAGGTGCGCAGCGACTACGGCACGCTCTTCGTGGTGCTGGTGGTCATTGGGGCCATCTGCATCA
TC
ATCATTGCGCTTGGCCTGCTCTACAACTGCTGGCAGCGCCGGCTGCCCAAGCTCAAGCACGTGTCGCA
C
GGCGAGGAGCTGCGCTTCGTGGAGAACGGCTGCCACGACAACCCCACGCTGGACGTGGCCAGCGACAGC
CAG
TCGGAGATGCAGGAGAAGCACCCCAGCCTGAACGGCGGCGGGGCCCTCAACGGCCCGGGGAGCTGGG
GG
GCGCTCATGGGGGGCAAGCGGGACCCCGAGGACTCGGACGTGTTCGAGGAGGACACGCACCTGTGA


Translation (605 aa):
MGRLLRAARLPPLLSPLLLLLVGGAFLGACVAGSDEPGPEGLTSTSLLDLLLPTGLEPLDSEEPSETMGL
G
AGLGAPGSGFPSEENEESRILQPPQYFWEEEEELNDSSLDLGPTA
DYVFPDLTEKAGSIEDTSQAQELP
N
LPSPLPKMNLVEPPWHMPPREEEEEEEEEEEREKEEVEKQEEEEEEELLPVNGSQEEAKPQVRDFSLTS
S
SQTPGATKSRHEDSGDQASSGVEVESSMGPSLLLPSVTPTTVTPGDQDSTSQEAEATVLPAAGLGVEFE
A
PQEASEEATAGAAGLSGQHEEVPALPSFPQTTAPSGAEHPDEDPLGSRTSASSPLAPGDMELTPSSATL
G
QEDLNQQLLEGQAAEAQSRIPWDSTQ
VICKDWSNLAGKNYIILNMTENIDCEVFRQHRGPQLLALVEEV
L
PRHGSGHHGAWHISLSKPSEKEQHLLMTLVGEQ
GVVPTQDVLSMLGDIRRSLEEIGIQNYSTTSSCQAR
A
SQVRSDYGTLFVVLVVIGAICIIIIALGLLYNCWQRRLPKLKHV
SHGEELRFVENGCHDNPTLDVASDS
Q
SEMQEKHPSLNGGGALNGPGSWGALMGGKRDPEDSDVFEEDTHL




Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser