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Report for CCDS39491.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39491.1 Public Mus musculus 6 Plekha8 23 108 98 CCDS HistoryNCBI Gene:231999Re-query CCDS DB by CCDS ID:39491.1Re-query CCDS DB by GeneID:231999See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39491.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101385.2 ENSMUSP00000098935.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101385.2Link to Ensembl Protein Viewer:ENSMUSP00000098935.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101385Re-query CCDS DB by Protein ID:ENSMUSP00000098935
Original member Current member NCBI NM_001001335.2 NP_001001335.1 Accepted alive Link to Nucleotide Sequence:NM_001001335.2Link to Protein Sequence:NP_001001335.1Re-query CCDS DB by Nucleotide ID:NM_001001335Re-query CCDS DB by Protein ID:NP_001001335Link to BLAST:NP_001001335.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001335.1 474 Q80W71-2 474 100% 0 0

Chromosomal Locations for CCDS 39491.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 54613187 54613208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54615215 54615370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54616633 54616757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54619194 54619352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54620272 54620312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54622121 54622278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54624075 54624231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54624553 54624638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54628846 54628904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54629820 54629950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54630504 54630574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54635710 54635771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54640784 54640981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGGCAGTCTGTGAGATTCAAGTTCATTCCGTGGATAACACTCGCATGGACCTCATCATCCCCGGGGAAC
AGTATTTCTACTTAAAAGCCAGGAGTGTGGCAGAGAGACAGCGGTGGCTGGTGGCTCTGGGATCTGCCAA
GGCCTGCCTGACAGATAGTAGGACTCAGAAGGAAAAAGAATTTGCAGAAAACACTGAAAACTTGAAAACC
AAAATGTCGGAGCTAAGACTGTACTGTGACCTCCTTGTTCAACAAGTAGATAAAACAAAAGAAGTGGCCA
CAGCCGGTGTCACTGACTCTGAGGAGGGAATTGATGTGGGAACCCTGCTAAAATCGACCTGCAACACTTT
CCTGAAGACCTTGGAAGAATGCATGCAGATTGCAAACGCAGCCTTTACCTCCGAACTGCTTTACCATACA
CCCCCAGGGTCCCCTCAACTAGCGGTGCTTAAGTCCAGCAAGATGAAACATCCCATCATACCAATTCATA
ATTCGTTGGAAAGGTCGATGGAGTTAAACAGTTGTGAAAATGGATCGCTAAGTATAGAAGTAAATGGTGA
TGAAGAAATCCTAATGAAAACCAAGAGTTCCTTGTATTTGAAGTCCACAGAGGTGGATTGCAGCATCTCC
AGTGAAGAAAACACAGATGACAATGTGACAGTCCAGGGGGAGATAATGAAGGAAGATGGCGAGGAAAACC
TGGAGAGTCATGACAAGGATCCGGCACAGCCTGGATCAGACTCGGTTTGCTCGCCAGAATCTCCCTGGGA
AGACAATGAAGAAGTTATTCCAACTTTCTTCAGTACTATGAATACCAGCTTTAGTGACATTGAACTTCTG
GAGGACAGTGGCATTCCCACAGAAGCATTCTTGGCCTCCTGTTATGCAGTGGTTCCAGTCCTAGACAAAC
TTGGTCCCACAGTGTTTGCTCCTGTTAAGATGGATCTTGTTGGAAATATTAAGAAGGTAAATCAGAAGTA
CATAACCAACAAGGAAGAGTTTACTACCCTCCAGAAGATAGTGCTGCATGAGGTGGAGGCTGACGTCGCT
CAGGTTAGGAACTCGGCGACGGAAGCCCTCTTGTGGCTGAAGAGAGGTCTCAAATTTCTAAAGGGATTTT
TGACAGAAGTGAAGAATGGAGAAAAGGATATCCAGACAGCACTGAATAACGCATATGGCAAAACATTACG
GCAACACCATGGCTGGGTAGTTCGAGGGGTCTTTGCGTTAGCACTGAGGGCAGCGCCATCCTATGAGGAC
TTTGTAGCTGCGCTAACCATAAAAGAAGGCGACCACCAGAAAGAAGCTTTCAGTGCTGGCATGCAGAGGG
ACCTCAGCCTTTACCTCCCCGCTATGGAAAAGCAGCTGGCCATACTGGACACGTTATATGAGATCCACGG
GCTGGAATCTGATGAGGTGGTGTGA

Translation (474 aa):
MAVCEIQVHSVDNTRMDLIIPGEQYFYLKARSVAERQRWLVALGSAKACLTDSRTQKEKEFAENTENLKT
KMSELRLYCDLLVQQVDKTKEVATAGVTDSEEGIDVGTLLKSTCNTFLKTLEECMQIANAAFTSELLYHT
PPGSPQLAVLKSSKMKHPIIPIHNSLERSMELNSCENGSLSIEVNGDEEILMKTKSSLYLKSTEVDCSIS
SEENTDDNVTVQGEIMKEDGEENLESHDKDPAQPGSDSVCSPESPWEDNEEVIPTFFSTMNTSFSDIELL
EDSGIPTEAFLASCYAVVPVLDKLGPTVFAPVKMDLVGNIKKVNQKYITNKEEFTTLQKIVLHEVEADVA
QVRNSATEALLWLKRGLKFLKGFLTEVKNGEKDIQTALNNAYGKTLRQHHGWVVRGVFALALRAAPSYED
FVAALTIKEGDHQKEAFSAGMQRDLSLYLPAMEKQLAILDTLYEIHGLESDEVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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