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Report for CCDS7960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7960.1 Public Homo sapiens 11 UBE2L6 24 110 108 CCDS HistoryNCBI Gene:9246Re-query CCDS DB by CCDS ID:7960.1Re-query CCDS DB by GeneID:9246See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7960.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000287156.9 ENSP00000287156.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000287156.9Link to Ensembl Protein Viewer:ENSP00000287156.4Re-query CCDS DB by Nucleotide ID:ENST00000287156Re-query CCDS DB by Protein ID:ENSP00000287156
Original member Current member NCBI NM_004223.5 NP_004214.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004223.5Link to Protein Sequence:NP_004214.1Re-query CCDS DB by Nucleotide ID:NM_004223Re-query CCDS DB by Protein ID:NP_004214Link to BLAST:NP_004214.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004214.1 153 O14933-1 153 100% 0 0

Chromosomal Locations for CCDS 7960.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 57552358 57552509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57554437 57554623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57560337 57560432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57567585 57567611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGATGGCGAGCATGCGAGTGGTGAAGGAGCTGGAGGATCTTCAGAAGAAGCCTCCCCCATACCTGCGGA
ACCTGTCCAGCGATGATGCCAATGTCCTGGTGTGGCACGCTCTCCTCCTACCCGACCAACCTCCCTACCA
CCTGAAAGCCTTCAACCTGCGCATCAGCTTCCCGCCGGAGTATCCGTTCAAGCCTCCCATGATCAAATTC
ACAACCAAGATCTACCACCCCAACGTGGACGAGAACGGACAGATTTGCCTGCCCATCATCAGCAGTGAGA
ACTGGAAGCCTTGCACCAAGACTTGCCAAGTCCTGGAGGCCCTCAATGTGCTGGTGAATAGACCGAATAT
CAGGGAGCCCCTGCGGATGGACCTCGCTGACCTGCTGACACAGAATCCGGAGCTGTTCAGAAAGAATGCC
GAAGAGTTCACCCTCCGATTCGGAGTGGACCGGCCCTCCTAA

Translation (153 aa):
MMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKF
TTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNA
EEFTLRFGVDRPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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