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Report for CCDS37051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37051.1 Public Mus musculus 15 Retreg1 23 108 98 CCDS HistoryNCBI Gene:66270Re-query CCDS DB by CCDS ID:37051.1Re-query CCDS DB by GeneID:66270See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37051.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110438.2 ENSMUSP00000106068.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110438.2Link to Ensembl Protein Viewer:ENSMUSP00000106068.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110438Re-query CCDS DB by Protein ID:ENSMUSP00000106068
Original member Current member EBI ENSMUST00000227275.1 ENSMUSP00000154471.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227275.1Link to Ensembl Protein Viewer:ENSMUSP00000154471.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227275Re-query CCDS DB by Protein ID:ENSMUSP00000154471
Original member Current member NCBI NM_001277315.1 NP_001264244.1 Accepted alive Link to Nucleotide Sequence:NM_001277315.1Link to Protein Sequence:NP_001264244.1Re-query CCDS DB by Nucleotide ID:NM_001277315Re-query CCDS DB by Protein ID:NP_001264244Link to BLAST:NP_001264244.1
Original member Current member NCBI NM_025459.3 NP_079735.2 Accepted alive Link to Nucleotide Sequence:NM_025459.3Link to Protein Sequence:NP_079735.2Re-query CCDS DB by Nucleotide ID:NM_025459Re-query CCDS DB by Protein ID:NP_079735Link to BLAST:NP_079735.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264244.1 356 Q8VE91-2 356 100% 0 0
NP_079735.2 356 Q8VE91-2 356 100% 0 0

Chromosomal Locations for CCDS 37051.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 25941209 25941243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25964224 25964350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25966633 25966717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25968407 25968544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25969796 25969860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25970098 25970224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 25971553 25972046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGCCTGCAGGCGGCGGCTGTGGACCAGGCAGAAGCTGGGAAGTCATCAATTCCAAGCCAGATGAAAGAG
CCAGACTGAGCCAGTGCATTGCAGAATCATGGATGAATTTCAGCATGTTTCTTCAAGAAATGTCTCTTTT
TAAACAGCAGAGTCCTGGCAAGTTTTGCCTCCTGGTCTGCAGTGTGTGCACATTTTTTACAATCTTGGGA
AGTTACATTCCTGGGGTCATACTCAGCTACCTTCTGTTACTGTTTGCTTTTTTGTGTCCACTGTTTAAAT
GTAATGATATTGGACAAAAAATATACAGCAAAGTCAAGTCCATTCTATTAAAACTAGATTTTGGAATTGG
AGAATATATTAACCAGAAGAAACGTGAGAGATCTGAAGCAGATAAAGAAAAAAGTCACAAGGATGACAGT
GAATTAGACTTTTCAGCTCTTTGTCCTAAGATTAGCCTCACAGTTGCTGCCAAAGAGTTATCTGTGTCAG
ACACAGATGTGTCAGAAGTCTCTTGGACTGACAATGGGACCTTCAACCTTTCAGAGGGGTACACTCCGCA
GACAGACACTTCTGACGATCTTGACCGGCCCAGTGAGGAAGTTTTCTCTCGAGATCTTTCAGATTTTCCA
TCTCTGGAAAATGGGACGGGAACAAATGATGAAGATGAATTAAGCCTGGGCTTACCCACAGAGCTCAAGA
GAAAGAAGCAGCAGTTGGATAGTGCTCACAGACCAAGCAAAGAACGGCAGTCGGCAGCTGGCCTCTCACT
TCCTCTCAAGAGCGACCAAGCCCTTCACTTGATGAGCAACCTGGCTGGGGATGTCATCACAGCCGCCATG
ACGGCTGCCATCAAAGACCAGCTAGAAGGAGCCCGGCAGGCACTCACTCAGGTGGCGCCCACTGCGGGAG
AGGACACAGACACTGAGGAGGGGGATGACTTTGAACTACTTGACCAGGCAGAGCTAGATCAAATTGAGAG
TGAGCTGGGACTAACACAAGACCAAGGGGCAGAAGCCCAGCAAAGTAAGAAATCCTCAGGCTTCCTCTCC
AATCTGCTTGGAGGCCATTAA

Translation (356 aa):
MPAGGGCGPGRSWEVINSKPDERARLSQCIAESWMNFSMFLQEMSLFKQQSPGKFCLLVCSVCTFFTILG
SYIPGVILSYLLLLFAFLCPLFKCNDIGQKIYSKVKSILLKLDFGIGEYINQKKRERSEADKEKSHKDDS
ELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSDDLDRPSEEVFSRDLSDFP
SLENGTGTNDEDELSLGLPTELKRKKQQLDSAHRPSKERQSAAGLSLPLKSDQALHLMSNLAGDVITAAM
TAAIKDQLEGARQALTQVAPTAGEDTDTEEGDDFELLDQAELDQIESELGLTQDQGAEAQQSKKSSGFLS
NLLGGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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