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Report for CCDS24053.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24053.1 Public Mus musculus 10 Tbxa2r 23 108 98 CCDS HistoryNCBI Gene:21390Re-query CCDS DB by CCDS ID:24053.1Re-query CCDS DB by GeneID:21390See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24053.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105325.3 ENSMUSP00000100962.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105325.3Link to Ensembl Protein Viewer:ENSMUSP00000100962.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105325Re-query CCDS DB by Protein ID:ENSMUSP00000100962
Original member Current member EBI ENSMUST00000220312.1 ENSMUSP00000151447.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220312.1Link to Ensembl Protein Viewer:ENSMUSP00000151447.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220312Re-query CCDS DB by Protein ID:ENSMUSP00000151447
Original member Current member NCBI NM_001277265.1 NP_001264194.1 Accepted alive Link to Nucleotide Sequence:NM_001277265.1Link to Protein Sequence:NP_001264194.1Re-query CCDS DB by Nucleotide ID:NM_001277265Re-query CCDS DB by Protein ID:NP_001264194Link to BLAST:NP_001264194.1
Original member Current member NCBI NM_001358512.1 NP_001345441.1 Accepted alive Link to Nucleotide Sequence:NM_001358512.1Link to Protein Sequence:NP_001345441.1Re-query CCDS DB by Nucleotide ID:NM_001358512Re-query CCDS DB by Protein ID:NP_001345441Link to BLAST:NP_001345441.1
Original member Current member NCBI NM_009325.4 NP_033351.1 Accepted alive Link to Nucleotide Sequence:NM_009325.4Link to Protein Sequence:NP_033351.1Re-query CCDS DB by Nucleotide ID:NM_009325Re-query CCDS DB by Protein ID:NP_033351Link to BLAST:NP_033351.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264194.1 341 P30987 341 100% 0 0
NP_001345441.1 341 P30987 341 100% 0 0
NP_033351.1 341 P30987 341 100% 0 0

Chromosomal Locations for CCDS 24053.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81332479 81333255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81334459 81334707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGTGGCCCAATGGCACCTCGCTGGGGGCCTGCTTTCGCCCGGTGAACATCACGCTGCAGGAGCGACGTG
CCATCGCGTCGCCATGGTTCGCTGCGTCCTTTTGCGCGCTGGGCCTGGGGTCCAACCTGCTGGCACTGAG
TGTGCTGGCTGGGGCGCGGCCCGGCGCGGGACCCCGCTCCTCCTTCCTCGCTCTGCTGTGCGGCCTTGTT
CTCACCGACTTCCTGGGGCTGCTAGTCACCGGCGCCATCGTGGCGTCGCAACACGCTGCCTTGTTGGACT
GGCGAGCCACTGACCCCAGCTGCCGCCTGTGCTACTTCATGGGGGTAGCTATGGTGTTCTTCGGGCTGTG
TCCCCTGCTCCTGGGGGCCGCCATGGCCTCTGAGCGCTTCGTGGGCATCACACGGCCCTTCTCACGACCC
ACGGCCACATCGCGCCGCGCCTGGGCTACTGTCGGGCTGGTGTGGGTGGCGGCCGGGGCACTCGGGCTGC
TGCCACTACTGGGGCTTGGCCGCTACAGTGTGCAGTACCCCGGCTCTTGGTGCTTCCTGACACTCGGGAC
ACAGCGCGGTGACGTGGTCTTCGGGCTCATATTCGCACTCCTGGGCAGCGCGTCCGTGGGGCTGTCCCTC
CTGCTCAACACCGTTAGTGTGGCCACACTCTGCCGGGTCTACCACACGCGCGAGGCCACACAGCGCCCAC
GGGACTGCGAGGTGGAGATGATGGTTCAGCTCGTGGGCATCATGGTGGTGGCCACGGTGTGTTGGATGCC
CTTGCTGGTCTTCATCATGCAGACTTTGTTGCAGACACCACCTGTCATGAGCTTCTCTGGGCAGCTGTTG
CGGGCCACAGAGCACCAGCTGCTCATCTACCTGCGTGTGGCCACCTGGAACCAGATCTTGGACCCCTGGG
TCTATATCCTCTTTCGCCGGTCTGTGCTCCGGCGCCTGCATCCGCGGTTCAGTTCACAGCTCCAGGCTGT
GTCCTTGCGCCGGCCTCCAGCCCAGGCCATGCTCAGTGGACCCTGA

Translation (341 aa):
MWPNGTSLGACFRPVNITLQERRAIASPWFAASFCALGLGSNLLALSVLAGARPGAGPRSSFLALLCGLV
LTDFLGLLVTGAIVASQHAALLDWRATDPSCRLCYFMGVAMVFFGLCPLLLGAAMASERFVGITRPFSRP
TATSRRAWATVGLVWVAAGALGLLPLLGLGRYSVQYPGSWCFLTLGTQRGDVVFGLIFALLGSASVGLSL
LLNTVSVATLCRVYHTREATQRPRDCEVEMMVQLVGIMVVATVCWMPLLVFIMQTLLQTPPVMSFSGQLL
RATEHQLLIYLRVATWNQILDPWVYILFRRSVLRRLHPRFSSQLQAVSLRRPPAQAMLSGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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