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Report for CCDS57560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57560.1 Public Mus musculus 7 Or14c44 23 108 98 CCDS HistoryNCBI Gene:257958Re-query CCDS DB by CCDS ID:57560.1Re-query CCDS DB by GeneID:257958See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 57560.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000174362.2 ENSMUSP00000133780.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174362.2Link to Ensembl Protein Viewer:ENSMUSP00000133780.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174362Re-query CCDS DB by Protein ID:ENSMUSP00000133780
Original member Current member NCBI NM_212436.2 NP_997601.1 Accepted alive Link to Nucleotide Sequence:NM_212436.2Link to Protein Sequence:NP_997601.1Re-query CCDS DB by Nucleotide ID:NM_212436Re-query CCDS DB by Protein ID:NP_997601Link to BLAST:NP_997601.1

Chromosomal Locations for CCDS 57560.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 86412364 86413299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGTCCAATTCCACCCTGGTTACCGAGTTCATGCTGGAAGATTTTGCTGAGAATTGGGAGCTCAGGATCC
TTCTCAGTGTGCTGTTCCTGCTGGTGTACCTGTACAGCCTGATAGGGAATCTTATCATCATCATTGCTAC
TACAGTTGACCAGACACTGAACACACCCATGTACTTCTTCCTCAGGAATCTATCCATTTTAGATATATGC
TACGTTTCTGTCACTGTGCCCAATGCTTGTATCAACTCTCTCACTGACCACAGGAATATTTCTGTAGGTG
GATGTGCAGCACAGATCTTTTTTGTCTATATTTGTGCATGTGTAGAGATTCTATTTCTTACCATCATGGC
CCAGGACCGCTATGTGGCCATTTGCAAACCTCTCCTCTATCCTGTGATCATGAACCACTGGTTCTGTGTT
CAGATGACACTGGCTTCCCTACTTAGCTCACTTGTCCTTGCAAGTGTGCACACTTTCAAAACTTTCCAGC
TGTCCTTCTGTCACTCTAATGTGGTCCCTCAGTTCTTCTGTGATATTCCTTCATTGCTGAGGCTTTCTTG
CTCTGATACCTTTAATAACAAACTCCTAATTCTTCTGTCTGCCATTTTGGTCAGTGGTAGCTGCTTTGTC
TTTATTGTCATATCATATGTTCGCATATTATCAACTGTGTTGAAGGTTCCTGTCAAAGGAGAGAGAGGGA
AGGCCTTTTCCACCTGTGTCCCTCACATTATTGTGGTGTCTGTCTTTCTTAGTTCTGCTGCTTATATATA
TCTAAAACCTCCAGTGGTAACATTAGAAGTAGCTAAGGAGATGACTCTTTCTGTATTCTATACCATTGTT
CCTCCATTCTTAAATCCTATCATCTATAGTCTTAGAAACAGACAGATAAAGAAGGCTGTGAGTAAACTTA
TATCAAGAATTTTTTTCCTTATTTGA

Translation (311 aa):
MSNSTLVTEFMLEDFAENWELRILLSVLFLLVYLYSLIGNLIIIIATTVDQTLNTPMYFFLRNLSILDIC
YVSVTVPNACINSLTDHRNISVGGCAAQIFFVYICACVEILFLTIMAQDRYVAICKPLLYPVIMNHWFCV
QMTLASLLSSLVLASVHTFKTFQLSFCHSNVVPQFFCDIPSLLRLSCSDTFNNKLLILLSAILVSGSCFV
FIVISYVRILSTVLKVPVKGERGKAFSTCVPHIIVVSVFLSSAAYIYLKPPVVTLEVAKEMTLSVFYTIV
PPFLNPIIYSLRNRQIKKAVSKLISRIFFLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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