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Report for CCDS20108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20108.1 Public Mus musculus 6 Gimap8 23 108 98 CCDS HistoryNCBI Gene:243374Re-query CCDS DB by CCDS ID:20108.1Re-query CCDS DB by GeneID:243374See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20108.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000203509.1 ENSMUSP00000145255.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203509.1Link to Ensembl Protein Viewer:ENSMUSP00000145255.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203509Re-query CCDS DB by Protein ID:ENSMUSP00000145255
Original member Current member EBI ENSMUST00000203083.2 ENSMUSP00000145286.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203083.2Link to Ensembl Protein Viewer:ENSMUSP00000145286.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203083Re-query CCDS DB by Protein ID:ENSMUSP00000145286
Original member Current member NCBI NM_001077410.1 NP_001070878.1 Accepted alive Link to Nucleotide Sequence:NM_001077410.1Link to Protein Sequence:NP_001070878.1Re-query CCDS DB by Nucleotide ID:NM_001077410Re-query CCDS DB by Protein ID:NP_001070878Link to BLAST:NP_001070878.1
Original member Current member NCBI NM_212486.2 NP_997651.1 Accepted alive Link to Nucleotide Sequence:NM_212486.2Link to Protein Sequence:NP_997651.1Re-query CCDS DB by Nucleotide ID:NM_212486Re-query CCDS DB by Protein ID:NP_997651Link to BLAST:NP_997651.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070878.1 688 Q75N62 688 100% 0 0
NP_997651.1 688 Q75N62 688 100% 0 0

Chromosomal Locations for CCDS 20108.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48647436 48647527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48650186 48650843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48651061 48651103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48656042 48656668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48658723 48659369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2067 nt):
ATGGCGACTTCATCCCACCAAGGAGCAGCTGCAGGAAGCCAGGCAGAGCACAGAAGCTGTGAAGCATCAG
TAGGACAGGGGGAAAGACCGAGTGCCAGCCAGGGTCAGGAGGGCAACTTCAAGCAGAACCAGGGAACGTC
CACACTGCGGCTCCTCCTGCTAGGGAAACAGGGCGCAGGCAAAAGTGCCACAGGAAACACCATTCTGGGC
AAAGCCGTGTTCGAGTCCAAGTTCAGTGATCACATGGTAACCGACAGATGCCAGAGCGAGAGTGTGTCAG
TAAGAGGGAAACAGGTCATTGTCATCGATACCCCAGATCTTTTCTCCTCACTGAGCTGTTCAGAGGTTAG
GCAGCAGAACCTGAAGCAGTGCTTGGAGCTCTTAGCTGATGATCACTGTGTGCTGCTCCTGGTCACTCCC
ATTGGCCACTATACAGAGGAGGACAGGGAGACCATTGAAGGCATCTGGGGTAAAATTGGCCCTAAAGCCT
ACAGACACATGATTGTGGTCTTCACTCGGGAAGATGAGCTGGATGAAGACTCCCTGTGGAACTACATTGA
GAGCAAGGAGTCTCTGAAGGAGTTGATTAAAAACATTGGAAGTCGACGATGTTGTACTTTCAACAACAAG
GCAGACAAGAAGCAGCGGGAACTGCAGGTGTTCAAGCTGCTTGATGCAATTGAACTTTTGATGATGGAAA
GCCCTGAGCCATATTTTGAGCCCTTAAAAATGGAAAGCAGTGGAGTCCAGGGTTGTGGGAATGGAGTGAC
ATATGAAGGGGACACTCTGTGTGGTTCAAAGAAGAGGCAGCCTCAGATCACAGGACCCGATTGTGATCCA
GACATGCCAGAGCTGAGGGTCCTCCTGATGGGGAAGCGTGGTGTTGGGAAAAGTGCAGCAGGAAACAGCA
TTCTGGGGAAGCAGGTCTTTAAGACTCAGTTCAGTGAGAAGCAGCGGGTCACCAAGGCCTTTGCATCCCA
CAGCAGGGTCTGGCAAGGGAAGAAAGTTCTGATTATAGATTCTCCAGAGATCTCATCGTGGAAGCTTGAT
GAGTCTGCTGTCAAGAATCACACCTTTCCAGGTCCCCATGCCTTTCTGCTGGTGACACCACTGGGTTCTT
CTTTAAAGAGTGATGACGATGTGTTCAGCATCATCAAACGTATTTTTGGAGAAAAATTCACCAAGTTCAC
AATTGTTCTCTTTACCAGGAAAGAAGATTTTGAGGATCAGGCTCTAGATAAGGTTATAAAGGAAAATGAT
GCTCTCTATAATCTCACCCAGAAATTTGGAGAAAGATACGCAATCTTCAACTACCGGGCATCTGTGGAGG
AGGAGCAGAGCCAGGTGGGCAAACTACTGAGCCAAATCGAGAAGATGGTGCAGTGCCACAGCAACAAGCC
TTGCGTCATCAGAGAGAAAGAACTTTTAAACATCATCCTCTTGGGAAGGAGTGGGGCTGGAAAGAGTGCA
ACTGGGAACACTATCCTGGGGAGATCTGCCTTCTTCTCCCAGCTCAGAGCTCAGCCGGTCACCAGTAGCA
GCCAGAGTGGTAAGAGGACACTGGACTGGCAGGATGTTGTGGTTGTGGACACTCCATCATTCATCCAGAC
GCCTGGCACTGAAAAGGATCCCTCCAGGTTAAAGGAGGAGATCCATCACTGTTTGAGTCTCTGCGAAGAA
GGCATGAAGATTTTTGTCCTGGTTCTCCAGTTGGGACGGTTCACCCAGGAAGATGAGGTGGTGGTGGAGC
AACTGGAGGCCAGTTTTGAGGAAAACATTATGAAATATATGATTGTGCTGTTTACACGGAAGGAAGACCT
AGGGGATGGGGACCTTCATGATTATACTAACAACACAAAGAACAAAGCCCTTAAAAAAATACTTAAAAAG
TGCAATGGGCGAGTTTGTGCTTTTAATAACAAAGAAACTGGTGAAGACCAGGAGACCCAGGTGAAAGGTC
TGTTGAAAATAGCCAATAGTCTCAAAAAGAACTATGATGAGCATTCAAATTCATGGGTGGGTCAATTAAA
ATCAACACTAGGCCAAATTACTATGGCATTTAAATGA

Translation (688 aa):
MATSSHQGAAAGSQAEHRSCEASVGQGERPSASQGQEGNFKQNQGTSTLRLLLLGKQGAGKSATGNTILG
KAVFESKFSDHMVTDRCQSESVSVRGKQVIVIDTPDLFSSLSCSEVRQQNLKQCLELLADDHCVLLLVTP
IGHYTEEDRETIEGIWGKIGPKAYRHMIVVFTREDELDEDSLWNYIESKESLKELIKNIGSRRCCTFNNK
ADKKQRELQVFKLLDAIELLMMESPEPYFEPLKMESSGVQGCGNGVTYEGDTLCGSKKRQPQITGPDCDP
DMPELRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLIIDSPEISSWKLD
ESAVKNHTFPGPHAFLLVTPLGSSLKSDDDVFSIIKRIFGEKFTKFTIVLFTRKEDFEDQALDKVIKEND
ALYNLTQKFGERYAIFNYRASVEEEQSQVGKLLSQIEKMVQCHSNKPCVIREKELLNIILLGRSGAGKSA
TGNTILGRSAFFSQLRAQPVTSSSQSGKRTLDWQDVVVVDTPSFIQTPGTEKDPSRLKEEIHHCLSLCEE
GMKIFVLVLQLGRFTQEDEVVVEQLEASFEENIMKYMIVLFTRKEDLGDGDLHDYTNNTKNKALKKILKK
CNGRVCAFNNKETGEDQETQVKGLLKIANSLKKNYDEHSNSWVGQLKSTLGQITMAFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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