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Report for CCDS23041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23041.1 Public Mus musculus 9 Or8g18 23 108 98 CCDS HistoryNCBI Gene:257959Re-query CCDS DB by CCDS ID:23041.1Re-query CCDS DB by GeneID:257959See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23041.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073248.1 ENSMUSP00000072979.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073248.1Link to Ensembl Protein Viewer:ENSMUSP00000072979.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000073248Re-query CCDS DB by Protein ID:ENSMUSP00000072979
Original member Current member NCBI NM_207665.1 NP_997548.1 Accepted alive Link to Nucleotide Sequence:NM_207665.1Link to Protein Sequence:NP_997548.1Re-query CCDS DB by Nucleotide ID:NM_207665Re-query CCDS DB by Protein ID:NP_997548Link to BLAST:NP_997548.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997548.1 314 P34983 314 100% 0 0

Chromosomal Locations for CCDS 23041.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 39237487 39238431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGAGGACATGGCAGCAGGAAACCACTGCACAGTGACTGAGTTCTTCTTAGCTGGGCTCTCAGAGAAGC
CAGAACTCCAGCTGCCACTCTTCCTGCTCTTCACAGGAATCTATCTGATCACCATGGCAGGGAACCTGGG
CATGATCACACTGATTGGGCTCAGTTCTCATCTGCACACACCCATGTACTATTTCCTCAGCAGTCTGTCC
TTCATTGACTTCTGTCAGTCTACAGTTGTCATTCCTAAAATGCTCGTGAGCTTTCTGACAGAGATGAACA
TCATTTCCTACTCTGAATGCATGGCTCAGCTCTACTTCTTCCTCACTTTTGGTATTGCAGAGTGCTACAC
ATTAGCTGCAATGGCCTATGACCGATATGTTGCTATTTGTAACCCCTTGCTTTACAATGTAACCATGTCC
TATCAGATTTACAGTTCTCTGATTTCAGGGGTATATATTTTTGCTGTGATCTGTTCATCCTTTAACACTG
GCTTCATGCTTAGGACTCAGTTCTGCAATTTAGATGTGATTAACCACTATTTCTGTGATCTTCTTCCCCT
CTTGAATCTTGCATCCTCTAATACCTACATCAATGAAATATTGATTCTATTTTTTGCTACACTGAATTCA
TTTGTCCCAGTGCTGACCATTATTACTTCCTACATCTTCATTATTGTCACCATCCTCTCCATTCACTCCA
GGGAGGGCAAGTTCAAAGCTTTTAGTACTTGTAGTACCCACATCTCTGCTGTTGCTATCTTCTATGGTTC
AGGTGCATTCACGTATTTACAGCCCTCATCACTGAATTCTATGGGCCAAGCAAAAGTGTCCTCTGTGTTT
TATACTACTGTTGTACCCATGCTGAACCCCTTGATCTACAGCCTGAGGAATAAGGATGTCAGTATTGCAC
TGAAAAAAATACTTGAAAGAAAAAAATTCATGTAA

Translation (314 aa):
MEDMAAGNHCTVTEFFLAGLSEKPELQLPLFLLFTGIYLITMAGNLGMITLIGLSSHLHTPMYYFLSSLS
FIDFCQSTVVIPKMLVSFLTEMNIISYSECMAQLYFFLTFGIAECYTLAAMAYDRYVAICNPLLYNVTMS
YQIYSSLISGVYIFAVICSSFNTGFMLRTQFCNLDVINHYFCDLLPLLNLASSNTYINEILILFFATLNS
FVPVLTIITSYIFIIVTILSIHSREGKFKAFSTCSTHISAVAIFYGSGAFTYLQPSSLNSMGQAKVSSVF
YTTVVPMLNPLIYSLRNKDVSIALKKILERKKFM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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