CCDS Report for Consensus CDS

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Report for CCDS18307.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
18307.1	Public	Mus musculus	4	Haus6	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18307.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000070607.8	ENSMUSP00000070504.7	Accepted	alive
		NCBI	NM_173400.3	NP_775576.2	Accepted	alive

Chromosomal Locations for CCDS 18307.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)

Genome Browser links:

Chromosome	Start	Stop
4	86581969	86582018
4	86582881	86583873
4	86585328	86585463
4	86585763	86585945
4	86586313	86586379
4	86588985	86589066
4	86593592	86593694
4	86594741	86594867
4	86595363	86595556
4	86599259	86599429
4	86600751	86600799
4	86601223	86601288
4	86602819	86602963
4	86604157	86604289
4	86605637	86605715
4	86607895	86607990
4	86611686	86611813

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2802 nt):
ATGAGCTCGGCCCGGGACTCCGCTTTCGAGAAGCAGCATCTCTGGATGTACCTGCAGGCGCTGGGCTTGG ATCCGAGCTCCAGCATCACGTTCGGCGGGAAGATGGTGCCGCACGCGCACCTTGGAGAGAATATGTTTGA CAAACTGAACCGTGATGCCTTTCATATAGTTTCTTATTTTTTGTTTAAAACATTGGATGAGGCTCTTGCC AAAGAAGTTTTCAGAGATTGCTGGCCTCCATTTGACCAAAAACTTGACATGGAATTCCGGAAACATTGCT GTGAATGGTTAAAAGAGATTTCTGCTGAATGTGGGAGTAGTTTTCCTCAAGTTGTTGGCTCATTGCTTAT GTCTCCTGGTGGCCCTAAGTTTATTCATCTGATGTATCATTTTGCAAGATATGTTGCAATCAAATATATT AAAACAAAATCTAACAATTCTCTACATTTTGCAGAAACATTTAATGTAAAGCCACAAGATATGCACAAGT GCCTTGCCAGAAGCCATGTAGCACGTAACAGATTTTTACAGATTTTGCAAAGAGAACATTATGTTATGCA AAAATACCAGGAAAATGTAAATCTGTCTGTTAAGCAAGTACGAAATGCAAGATCAGAGTGCATGAGTCTA CAGAACCAAATTAAAAGAATGGAGCCATATGATGAGAAGAGTAATACACAAGAGAAGATTCAAAAGGTTC GGTCCTTGTGGGCTTCAGTGAATGAGACACTCATGGTTGTGGAAAAGGAGAGAGACGTTATTAGTTCACT CTTTGGCTTTGTCAACCAGTATGCTTTGGATGGAGCTCATGTTGCTGTTAATATTCCAAGGCTCTTACTT GACAGACTTGAGGAGCAGATATGTCGGTTGCAGATAGGAAATGTTTATGAGGCTGGAAAATTGAACCTCT TAACAATTATTCACTTGTTAAATGAAGTCTTGAAAATAATGAAATATGAACATTGTAAGGCTGGCCAAGC AGGATTGACAATAAATCTCCACTACCTTGAAAAAGAAACCAAATTTCAGAGGGAAAGATTATCACATATG AAGCATATGAGGCATAAAGTAAAAGAGACCGTCACTGCAGTGAGACAGTCTATTGCTGACAAGGAGGGAA AGTGGCATATGAAGTGGAAAGGCTTTCTTGGCCTGTCTCCTTTCAGACTAATTAAAGACAGACCTGCAGC TGTGGATCTTTTGCCTCCCATGTCTCCTCTTACGTTTGATCCTGTGTCAGAGGAAGTATATGCAAAGAGT ATACTTTTTAAGTATCCTGCTTCACTTCCAGATTCACATAAAGAACCTAAACAAGAAAGTGGTAGCAGAA GAGAAGTGGATACCCCAGGAAGTGTGTGTGATGGAGCTAACAGCCCTGTGCCTTTTCCCTTACAGTGTGC CGCGTCCTCAGATACAAACAGTTCCACACTCCTTGAGAAGGATCCAAATATGAGGACTCCCATAGAGAAA ACCTTGACATATAAGACAATAGCAGACTCTGAAGAGGAAGACTCTCCTCTATCAGATACTGCAAAGAATT CACAAAGTAGTGTTTCCAGAGGGACTCTGCCGGTGAAGAGGAGTGAGCCATTCCAGAAAGAGCAAGCCCG TCTGGTAGATGAGGTTGCCAGAGTAGTTCTGTCTGATTCCCCACAGCTCTCTGAGAGAAAAGAAGTTGAA TTGGAGGAGCTGATTGACACTTTAATTTCTAATCCCTTCTTAACCAGGAAGCAAATTCCCCGGACTCCAG AGAACTTGATAACTGATATTAGGAGCTCATGGAGAAAAGCTGTTGAAACTGAAGATAACAGAAGTTCAGA TGGGATTCTAGTGGATGCCAGTGCTAGAGAAGTGTCGTCAGAGTCTTCATCTACACTGCATAATCAGAGG GAATTTAGCCTGGCTATTTTTTCCCCAGATTTTGATCGGTCTTATTTTCCTGAAGAGAAAGCTGTCTCAG ATCAGCTTAAAGGTTTACCTCAGAAACATCTGGTAACAAGTCAGATCAGAGAACCCCCAACAGAAGATGT GTCAGACTTGGTAAATAAGAAAATGATTTGGAAGCAAGATTTAGAATGTGCAACCACCAGGCTTTCAGAA ACTAGTCACATGGATGTATTCTCCCCTGTTGTGGGCAGTGGAATAGATGTGATGAGTAGAAGTAAAGAGG ACTGTGTTCCAGTACCGCCGGACCACTCACAAGCTTCTTGCATTGAGCCTTCCACACATAAAACTCTGTT ATGGGATTCTTTTCAGAGGTTGAGTGGTATTGGTATATTACATGAAACTCTTCCAGAAGTTGGTCGCCTA AGTCTTAATAGTTCTACTAGTTCAGAGACTAGTTTTAATCTGGAACCAAAGAGTTATGTGCACAGTGATG CTTTTGCAGATGATGTGGGAAAAGGACAAGCTATTCCAGAATTAGATTCTAATTTACAGGCTCGTCTCAC TAGTTATGAGGCTCTGAAGAAATCTCTTAGCAAAATCAGGGAAGAATCTTACCTGTCTAATCCCAAGACA CTTGAACAACACAAAGTAGAACTGAGCCCTGTAGCCAAAGCTGTGCAAGCAGATGATGCACACACTGTTT GGGACACTCAGGATTTGTTTATTGACTACGCAAAGCCATCTTCCCTCGTGCCACTTGATGGAAAAACACA GACTGTATCACTAACTAAAGCTTTTCTGGTGGAGCAAAAATTGAAGACCACAGTACCATGTAGCCTTGGA GAATTTCTGCCTAGTTTAAAAGAAGAAGAAATCTCAAGTAAGAGCCTTGAAGCAAGAGACTCTCTGATTT GA
Translation (933 aa):
MSSARDSAFEKQHLWMYLQALGLDPSSSITFGGKMVPHAHLGENMFDKLNRDAFHIVSYFLFKTLDEALA KEVFRDCWPPFDQKLDMEFRKHCCEWLKEISAECGSSFPQVVGSLLMSPGGPKFIHLMYHFARYVAIKYI KTKSNNSLHFAETFNVKPQDMHKCLARSHVARNRFLQILQREHYVMQKYQENVNLSVKQVRNARSECMSL QNQIKRMEPYDEKSNTQEKIQKVRSLWASVNETLMVVEKERDVISSLFGFVNQYALDGAHVAVNIPRLLL DRLEEQICRLQIGNVYEAGKLNLLTIIHLLNEVLKIMKYEHCKAGQAGLTINLHYLEKETKFQRERLSHM KHMRHKVKETVTAVRQSIADKEGKWHMKWKGFLGLSPFRLIKDRPAAVDLLPPMSPLTFDPVSEEVYAKS ILFKYPASLPDSHKEPKQESGSRREVDTPGSVCDGANSPVPFPLQCAASSDTNSSTLLEKDPNMRTPIEK TLTYKTIADSEEEDSPLSDTAKNSQSSVSRGTLPVKRSEPFQKEQARLVDEVARVVLSDSPQLSERKEVE LEELIDTLISNPFLTRKQIPRTPENLITDIRSSWRKAVETEDNRSSDGILVDASAREVSSESSSTLHNQR EFSLAIFSPDFDRSYFPEEKAVSDQLKGLPQKHLVTSQIREPPTEDVSDLVNKKMIWKQDLECATTRLSE TSHMDVFSPVVGSGIDVMSRSKEDCVPVPPDHSQASCIEPSTHKTLLWDSFQRLSGIGILHETLPEVGRL SLNSSTSSETSFNLEPKSYVHSDAFADDVGKGQAIPELDSNLQARLTSYEALKKSLSKIREESYLSNPKT LEQHKVELSPVAKAVQADDAHTVWDTQDLFIDYAKPSSLVPLDGKTQTVSLTKAFLVEQKLKTTVPCSLG EFLPSLKEEEISSKSLEARDSLI

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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