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Report for CCDS24114.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24114.2 Public Mus musculus 10 Ano4 23 108 98 CCDS HistoryNCBI Gene:320091Re-query CCDS DB by CCDS ID:24114.2Re-query CCDS DB by GeneID:320091See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 24114.1
The coding region has been updated to represent an alternative splicing pattern, resulting in an extended N-terminus that is more supported by the available transcript and conservation data. The exon combination of this updated representation is inferred due to a lack of full-length transcript support in mouse, but it is supported by partial mouse transcript alignments and by full-length human transcript data (e.g., AK293810.1 and AK316105.1).

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 24114.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000182341.7 ENSMUSP00000138193.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182341.7Link to Ensembl Protein Viewer:ENSMUSP00000138193.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182341Re-query CCDS DB by Protein ID:ENSMUSP00000138193
Original member Current member NCBI NM_001277188.1 NP_001264117.1 Accepted alive Link to Nucleotide Sequence:NM_001277188.1Link to Protein Sequence:NP_001264117.1Re-query CCDS DB by Nucleotide ID:NM_001277188Re-query CCDS DB by Protein ID:NP_001264117Link to BLAST:NP_001264117.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264117.1 955 Q8C5H1-1 955 100% 0 0

Chromosomal Locations for CCDS 24114.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88952194 88952385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88954665 88954770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88960582 88960701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88971268 88971415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88972739 88972891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88978676 88978818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88980944 88981041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88981159 88981216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88982177 88982288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88983755 88983791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88992875 88993039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88995224 88995364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88998078 88998160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89016075 89016135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89023876 89023972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89024966 89025100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89027195 89027316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89029259 89029314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89035075 89035181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89068100 89068231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89084547 89084591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89088193 89088293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89112791 89112949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89116866 89117002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89125120 89125224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89149250 89149304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2868 nt):
ATGGAGGCCAGCTCTTCTGGAATCACTAATGGAAAAAATAAAGTTTTCCACGCAGAAGGTGGACTGGATT
TGCAAAGCCATCAGCTGGATATGCAAATACTGCCCGACGGCCCAAAGAGCGATGTGGACTTTTCAGAGAT
TCTTAATGCAATACAAGAAATGGCCAAGGATGTCAATATTCTTTTTGACGAACTTGAGGCTGTCAACAGC
CCTTGCAAAGATGATGATTCTCTGCTTCACCCTGGAAATCTGACGAGCACTTCGGAGGACACCAGCAGGC
TAGAAGCAGGGGGAGAGACAGTGCGAGAACGAAACAAATCCAATGGACTTTACTTTAGAGACGGAAAATG
TCGAATTGACTACATTCTTGTGTACAGAAAATCCAACCCTCAGACTGAAAAGAGAGAAGTGTTTGAAAGA
AATATTAGAGCAGAAGGATTACAAATGGAGAAAGAGTCCTCTCTAATAAATAGTGACATTATCTTTGTGA
AGTTGCATGCCCCATGGGAAGTCCTTGGAAGATATGCAGAGCAAATGAATGTACGGATGCCTTTCAGGAG
AAAAATCTATTACCTGCCCCGCCGGTACAAGTTCATGAGCAGGATCGATAAACAAATAAGCAGGTTCCGG
AGATGGTTACCTAAGAAGCCAATGAGGCTGGACAAGGAGACACTGCCAGACCTGGAAGAGAATGACTGCT
ACACTGCCCCTTTCAGCCAACAAAGGATCCATCACTTCATCATACACAACAAAGACACTTTCTTCAACAA
TGCCACAAGAAGCAGAATCGTGCATCATATTTTACAAAGAATAAAGTACGAGGAAGGAAAGAATAAAATC
GGTCTGAACCGCTTGCTTACCAATGGCTCCTATGAAGCTGCCTTTCCCCTGCATGAGGGAAGTTACAGGA
GTAAAAACTCCATTAAAACCCATGGAGCTGTAAACCACCGACATCTACTGTATGAGTGCTGGGCCTCCTG
GGGCGTGTGGTACAAGTACCAGCCTTTGGATCTTGTCAGGCGATATTTTGGAGAGAAGATTGGACTGTAT
TTCGCCTGGCTGGGCTGGTACACAGGCATGCTCTTCCCCGCAGCCTTCATTGGGTTGTTTGTCTTCTTGT
ATGGAGTCACCACTCTGGATCACTGCCAAGTCAGTAAAGAAGTCTGCCAAGCAACAGATATCATCATGTG
TCCTGTATGTGACAAATACTGTCCATTCATGAGGCTTTCAGACAGCTGTGTCTATGCCAAGGTGACCCAC
CTTTTTGACAATGGGGCCACTGTGTTCTTTGCTGTGTTCATGGCAGTCTGGGCTACTGTTTTCCTGGAAT
TCTGGAAGAGACGCCGAGCAGTGATCGCTTATGACTGGGATCTGATTGACTGGGAAGAAGAGGAGGAAGA
AATACGACCCCAGTTTGAAGCCAAGTATTCCAAGAAAGAGCGGATGAATCCCATTTCAGGAAAGCCAGAA
CCTTATCAAGCATTTACTGATAAATGCAGCAGACTTATCGTTTCTGCATCAGGAATATTCTTCATGATCT
GCGTGGTGATCGCTGCTGTGTTCGGGATCGTCATTTACAGGGTGGTGACTGTGAGCACTTTCGCTGCCTT
TAAGTGGGCATTAATCAGGAATAACTCTCAGGTTGCAACCACAGGGACTGCAGTATGCATCAACTTTTGT
ATCATTATGCTGCTGAATGTGCTCTATGAAAAAGTCGCACTCCTTCTAACAAATCTGGAACAGCCTCGCA
CAGAATCCGAGTGGGAGAACAGCTTTACCTTGAAAATGTTTCTTTTTCAGTTTGTCAATCTGAACAGCTC
CACTTTTTACATCGCATTCTTCCTCGGAAGATTTACAGGACACCCAGGTGCCTACTTGAGATTGATAAAC
AGGTGGAGGCTAGAAGAGTGCCACCCTAGCGGATGCCTTATTGATCTCTGCATGCAAATGGGTATTATAA
TGGTGCTAAAGCAGACCTGGAATAATTTCATGGAACTTGGCTACCCGTTAATTCAAAATTGGTGGACTAG
AAGAAAAGTCCGACAAGAACATGGGACTGAAAGGAAAATAAATTTCCCACAGTGGGAAAAGGACTACAAT
CTTCAGCCGATGAATGCCTATGGACTCTTCGATGAATACCTGGAAATGATCCTTCAGTTCGGATTCACAA
CGATCTTTGTGGCAGCTTTTCCTCTAGCACCGCTTCTGGCCTTACTGAATAACATCATTGAAATCCGACT
TGATGCTTATAAGTTTGTTACTCAGTGGAGAAGGCCTTTGGCTTCGAGAGCCAAAGACATAGGAATTTGG
TATGGAATTCTCGAAGGCATTGGGATTCTGTCTGTTATTACAAATGCATTTGTCATAGCAATAACATCCG
ACTTCATCCCTCGCTTAGTATATGCTTATAAATATGGACCTTGTGCAGGCCAAGGAGAAGCTGGGCAAAA
GTGCATGGTTGGCTATGTGAATGCCAGCTTGTCTGTGTTCCGAATTTCTGACTTTGAAAATCGGTCGGAG
CCAGAGTCTGATGGCAGTGAGTTCTCAGGAACCCCTCTGAAGTACTGCAGATATCGAGACTACCGGGACC
CTCCTCACTCTTTGGCACCCTATGGCTACACACTGCAGTTCTGGCATGTTCTCGCAGCTCGGCTGGCTTT
TATCATTGTGTTTGAGCACCTCGTGTTTTGTATAAAGCACCTCATTTCCTATCTGATACCAGACCTCCCG
AAAGATCTAAGGGACCGGATGAGGAGAGAGAAGTACTTGATCCAGGAGATGATGTATGAGGCTGAGCTGG
AGCGCCTCCAGAAAGAACGGAAGGAGAGGAAGAAGAACGGAAAAGCACATCACAATGAGTGGCCATGA

Translation (955 aa):
MEASSSGITNGKNKVFHAEGGLDLQSHQLDMQILPDGPKSDVDFSEILNAIQEMAKDVNILFDELEAVNS
PCKDDDSLLHPGNLTSTSEDTSRLEAGGETVRERNKSNGLYFRDGKCRIDYILVYRKSNPQTEKREVFER
NIRAEGLQMEKESSLINSDIIFVKLHAPWEVLGRYAEQMNVRMPFRRKIYYLPRRYKFMSRIDKQISRFR
RWLPKKPMRLDKETLPDLEENDCYTAPFSQQRIHHFIIHNKDTFFNNATRSRIVHHILQRIKYEEGKNKI
GLNRLLTNGSYEAAFPLHEGSYRSKNSIKTHGAVNHRHLLYECWASWGVWYKYQPLDLVRRYFGEKIGLY
FAWLGWYTGMLFPAAFIGLFVFLYGVTTLDHCQVSKEVCQATDIIMCPVCDKYCPFMRLSDSCVYAKVTH
LFDNGATVFFAVFMAVWATVFLEFWKRRRAVIAYDWDLIDWEEEEEEIRPQFEAKYSKKERMNPISGKPE
PYQAFTDKCSRLIVSASGIFFMICVVIAAVFGIVIYRVVTVSTFAAFKWALIRNNSQVATTGTAVCINFC
IIMLLNVLYEKVALLLTNLEQPRTESEWENSFTLKMFLFQFVNLNSSTFYIAFFLGRFTGHPGAYLRLIN
RWRLEECHPSGCLIDLCMQMGIIMVLKQTWNNFMELGYPLIQNWWTRRKVRQEHGTERKINFPQWEKDYN
LQPMNAYGLFDEYLEMILQFGFTTIFVAAFPLAPLLALLNNIIEIRLDAYKFVTQWRRPLASRAKDIGIW
YGILEGIGILSVITNAFVIAITSDFIPRLVYAYKYGPCAGQGEAGQKCMVGYVNASLSVFRISDFENRSE
PESDGSEFSGTPLKYCRYRDYRDPPHSLAPYGYTLQFWHVLAARLAFIIVFEHLVFCIKHLISYLIPDLP
KDLRDRMRREKYLIQEMMYEAELERLQKERKERKKNGKAHHNEWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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