NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16523.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16523.1 Public Mus musculus 2 Or4k77 23 108 98 CCDS HistoryNCBI Gene:228443Re-query CCDS DB by CCDS ID:16523.1Re-query CCDS DB by GeneID:228443See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16523.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090328.4 ENSMUSP00000087800.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090328.4Link to Ensembl Protein Viewer:ENSMUSP00000087800.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000090328Re-query CCDS DB by Protein ID:ENSMUSP00000087800
Original member Current member EBI ENSMUST00000204064.3 ENSMUSP00000145495.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204064.3Link to Ensembl Protein Viewer:ENSMUSP00000145495.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000204064Re-query CCDS DB by Protein ID:ENSMUSP00000145495
Original member Current member EBI ENSMUST00000216637.1 ENSMUSP00000150510.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216637.1Link to Ensembl Protein Viewer:ENSMUSP00000150510.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216637Re-query CCDS DB by Protein ID:ENSMUSP00000150510
Original member Current member NCBI NM_207236.1 NP_997119.1 Accepted alive Link to Nucleotide Sequence:NM_207236.1Link to Protein Sequence:NP_997119.1Re-query CCDS DB by Nucleotide ID:NM_207236Re-query CCDS DB by Protein ID:NP_997119Link to BLAST:NP_997119.1

Chromosomal Locations for CCDS 16523.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 111368634 111369551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGAAGAAGGAAACCAGACTGTGGTGTCTGAGTTTATTTTTCAGGGACTTTGTGCTTCAAAGGAACTAC
AGCTCTTCCTTCTGCTGCCATTTTCCATCCTCTATCTAATGGCTGTGGTAGGCAACCTCTTTGTTGTGAT
ATTGATCATCATTGATCATCATCTCCATTCTCCCATGTACTTTCTGTTAGCTAATCTATCATTTATTGAC
TTCTGCCTTTCCTCAGTTACCACCCCCAAACTGATAACTGACCTCCTAAAAGATAACAAAACCATTTCCT
TTGGGGGCTGCATGAGCCAGATCCTCTGTGTGCACTTCTTTGGAGGAGGTGAGATGGTGCTTCTTGTAAC
AATGGCCTATGACCGGTATGTGGCCATCTGCAGGCCACTCCACTACAGCAGCATCATGGACAGACAGAAG
TGCATCTGGCTCGTTGTGATCTCGTGGACCATTGGCTTTATACATGCCATGAGTCAACTTATTCTGGTTT
TGGAACTACCTTTCTGTGGACCTAGAGTGATAGACAGCTTTTTCTGTGATATTCCTTTGGTGATGAAATT
AGCCTGCATGAATACTGATACACTGGAAATTCTAATAAATGCTGACAGTGGTGTTTTGGCAACAACTTGT
TTCATCCTCTTACTGATATCTTATACTTACATTCTATTAACTGTTCAACTTCACTCTAAAGATGGTTCAT
CAAAGGCCCTATCTACATGCACATCCCATATCATAGTGGTTCTGCTGTTCTTTGGGCCAGTCATTTTCAT
CTATCTGTGGCCAGTTAGCATCACCTGGGTTGACAAGTTTCTTGCTGTGTTTTACTCAGTCATCACACCT
CTCCTTAATCCAGCCATCTACACACTGAGAAATAAAGATATTAAAAATGCCATAAAGAAGCTGATAAATC
ACATGTGA

Translation (305 aa):
MEEGNQTVVSEFIFQGLCASKELQLFLLLPFSILYLMAVVGNLFVVILIIIDHHLHSPMYFLLANLSFID
FCLSSVTTPKLITDLLKDNKTISFGGCMSQILCVHFFGGGEMVLLVTMAYDRYVAICRPLHYSSIMDRQK
CIWLVVISWTIGFIHAMSQLILVLELPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGVLATTC
FILLLISYTYILLTVQLHSKDGSSKALSTCTSHIIVVLLFFGPVIFIYLWPVSITWVDKFLAVFYSVITP
LLNPAIYTLRNKDIKNAIKKLINHM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH