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Report for CCDS50674.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50674.1 Public Mus musculus 2 Ltk 23 108 98 CCDS HistoryNCBI Gene:17005Re-query CCDS DB by CCDS ID:50674.1Re-query CCDS DB by GeneID:17005See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 50674.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000182203.1 ENSMUSP00000138201.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182203.1Link to Ensembl Protein Viewer:ENSMUSP00000138201.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182203Re-query CCDS DB by Protein ID:ENSMUSP00000138201
Original member Current member NCBI NM_008523.2 NP_032549.2 Accepted alive Link to Nucleotide Sequence:NM_008523.2Link to Protein Sequence:NP_032549.2Re-query CCDS DB by Nucleotide ID:NM_008523Re-query CCDS DB by Protein ID:NP_032549Link to BLAST:NP_032549.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032549.2 576 P08923-2 576 100% 0 0

Chromosomal Locations for CCDS 50674.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119751602 119751934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119752066 119752156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119752231 119752365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119752497 119752598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119752695 119752787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119752926 119753023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119753114 119753243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119753427 119753491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119753615 119753705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119754172 119754364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119754578 119754673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119755131 119755283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119755615 119755713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119758247 119758298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol L (codon CTG) with M at amino acid position 1

Nucleotide Sequence (1731 nt):
CTGGAGACCCGCGCGGCGGCGCCGGGCAGCGGCGGGAGAGGAGGCGCGGCAGGCGGTGATACTTCTGAGT
CTGACCTCCTCTGGGCTGATGGGGAAGATGGCACATCCTTTGTCCACCCCAGTGGTGAGCTCTACCTACA
GCCTCTGGCAGTCACAGAGGGCCATGGGGAGGTGGAGATCCGAAAGCATCCCAACTGCAGTCACTGCCCT
TTCAAAGACTGCCAGTGGCAGGCAGAGCTCTGGACGGCCGAATGCACGTGCCCAGAGGGCACGGAGCTAG
CTGTGGATAATGTCACTTGCATGGACCTGCCAACCACCGCAAGCCCTCTGATCCTGATGGGAGCTGTAGT
GGCAGCCTTGGCACTGAGTCTCCTAATGATGTGTGCAGTCCTGATTCTAGTGAACCAGAAGTGTCAGGGC
CTGTGGGGGACCAGGCTGCCAGGCCCTGAGCTTGAGCTAAGCAAGCTTCGATCCTCTGCCATCAGGACAG
CACCCAACCCTTACTATTGTCAGGTGGGACTCAGTCCTGCCCAGCCCTGGCCTTTGCCCCCAGGGCTCAC
TGAGGTTTCACCAGCCAATGTCACTCTACTCAGAGCCCTTGGCCATGGTGCCTTTGGGGAAGTGTACGAG
GGACTAGTGACTGGTCTTCCTGGGGACTCCAGTCCTCTTCCAGTGGCTATTAAGACTCTGCCAGAGCTCT
GCTCCCATCAGGATGAGCTGGATTTTCTCATGGAGGCTCTGATCATCAGCAAGTTCAGCCATCAGAACAT
TGTACGCTGTGTGGGGCTCAGCTTTCGGTCTGCCCCGCGCCTCATTCTGCTGGAGCTGATGTCTGGTGGG
GACATGAAGAGCTTTTTGAGGCACAGCAGACCACACCCAGGACAACTGGCACCTCTGACCATGCAGGACC
TATTGCAGCTGGCCCAGGATATAGCCCAGGGCTGCCACTACCTGGAGGAAAATCACTTCATTCACAGAGA
CATTGCTGCCCGTAACTGTCTGCTTAGCTGCAGTGGAGCCAGCCGAGTGGCCAAGATTGGAGATTTTGGA
ATGGCAAGAGATATCTACCAGGCCAGTTATTATCGCAAGGGTGGCCGGACCTTGCTCCCAGTCAAGTGGA
TGCCGCCAGAAGCTCTCCTGGAGGGCCTTTTCACATCCAAGACAGACTCCTGGTCTTTTGGGGTCCTGCT
CTGGGAGATCTTCTCACTGGGGTATATGCCCTACCCTGGACATACCAACCAGGAGGTTCTAGACTTCATT
GCCACAGGGAACAGGATGGACCCTCCTAGGAACTGTCCTGGGCCAGTGTACCGAATCATGACCCAGTGTT
GGCAGCATCAGCCGGAGCTCCGCCCTGACTTTGGCAGCATCTTGGAACGGATTCAGTACTGCACTCAGGA
CCCTGATGTGCTGAACTCACCCCTGCCCGTGGAACCTGGGCCCATTCTAGAGGAGGAAGAGGCCTCCAGG
CTGGGAAACAGGTCACTGGAGGGTCTTAGATCCCCAAAGCCCCTAGAGCTGAGTTCTCAGAACTTGAAGA
GCTGGGGAGGAGGCCTTCTTGGCTCTTGGCTGCCCTCTGGCCTCAAGACCCTCAAACCCAGGTGCCTCCA
ACCTCAGAACATTTGGAACCCCACCTATGGCTCCTGGACCCCAAGGGGCCCCCAGGGTGAAGATACAGGC
ATTGAACACTGCAATGGCTCCTCCTCAAGTTCCATTCCAGGCATCCAGTAG

Translation (576 aa):
METRAAAPGSGGRGGAAGGDTSESDLLWADGEDGTSFVHPSGELYLQPLAVTEGHGEVEIRKHPNCSHCP
FKDCQWQAELWTAECTCPEGTELAVDNVTCMDLPTTASPLILMGAVVAALALSLLMMCAVLILVNQKCQG
LWGTRLPGPELELSKLRSSAIRTAPNPYYCQVGLSPAQPWPLPPGLTEVSPANVTLLRALGHGAFGEVYE
GLVTGLPGDSSPLPVAIKTLPELCSHQDELDFLMEALIISKFSHQNIVRCVGLSFRSAPRLILLELMSGG
DMKSFLRHSRPHPGQLAPLTMQDLLQLAQDIAQGCHYLEENHFIHRDIAARNCLLSCSGASRVAKIGDFG
MARDIYQASYYRKGGRTLLPVKWMPPEALLEGLFTSKTDSWSFGVLLWEIFSLGYMPYPGHTNQEVLDFI
ATGNRMDPPRNCPGPVYRIMTQCWQHQPELRPDFGSILERIQYCTQDPDVLNSPLPVEPGPILEEEEASR
LGNRSLEGLRSPKPLELSSQNLKSWGGGLLGSWLPSGLKTLKPRCLQPQNIWNPTYGSWTPRGPQGEDTG
IEHCNGSSSSSIPGIQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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