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Report for CCDS42494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42494.1 Public Homo sapiens 19 MYO1F 24 110 108 CCDS HistoryNCBI Gene:4542Re-query CCDS DB by CCDS ID:42494.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42494.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000644032.2 ENSP00000494550.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000644032.2Link to Ensembl Protein Viewer:ENSP00000494550.1Re-query CCDS DB by Nucleotide ID:ENST00000644032Re-query CCDS DB by Protein ID:ENSP00000494550
Original member Current member NCBI NM_012335.4 NP_036467.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012335.4Link to Protein Sequence:NP_036467.2Re-query CCDS DB by Nucleotide ID:NM_012335Re-query CCDS DB by Protein ID:NP_036467Link to BLAST:NP_036467.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036467.2 1098 O00160 1098 100% 0 0

Chromosomal Locations for CCDS 42494.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8521528 8521604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8522377 8522546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8522634 8522829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8525479 8525562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8526453 8526601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8526789 8526935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8527338 8527483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8530196 8530365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8530459 8530573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8536252 8536396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8536499 8536597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8536949 8537055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8539947 8540028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8541906 8541991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8544297 8544464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8545650 8545736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8548036 8548122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8548237 8548317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8550160 8550356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8550562 8550694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8551740 8551874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8552033 8552164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8553139 8553228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8553350 8553437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8554477 8554571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8554654 8554743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8555659 8555796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8577307 8577309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3297 nt):
ATGGGCAGCAAGGAGCGCTTCCACTGGCAGAGCCACAACGTGAAGCAGAGCGGCGTGGATGACATGGTGC
TTCTTCCCCAGATCACCGAAGACGCCATTGCCGCCAACCTCCGGAAGCGCTTCATGGACGACTACATCTT
CACCTACATCGGCTCTGTGCTCATCTCTGTAAACCCCTTCAAGCAGATGCCCTACTTCACCGACCGTGAG
ATCGACCTCTATCAGGGCGCGGCCCAGTATGAGAATCCCCCGCACATCTACGCCCTCACGGACAACATGT
ACCGGAACATGCTTATCGACTGTGAGAACCAGTGTGTCATCATTAGTGGAGAGAGTGGAGCTGGGAAGAC
AGTGGCAGCCAAATATATCATGGGCTACATCTCCAAGGTGTCTGGCGGAGGCGAGAAGGTCCAGCACGTC
AAAGATATCATCCTGCAGTCCAACCCGCTGCTCGAGGCCTTCGGCAACGCCAAGACTGTGCGCAACAACA
ATTCCAGCCGCTTTGGCAAGTACTTTGAGATCCAGTTCAGCCGAGGTGGGGAGCCAGATGGGGGCAAGAT
CTCCAACTTCTTGCTGGAGAAGTCCCGCGTGGTCATGCAAAATGAAAATGAGAGGAACTTCCACATCTAC
TACCAGCTGCTGGAAGGGGCCTCCCAGGAGCAAAGGCAGAACCTGGGCCTCATGACACCGGACTACTATT
ACTACCTCAACCAATCGGACACCTACCAGGTGGACGGCACGGACGACAGAAGCGACTTTGGTGAGACTCT
GAGTGCTATGCAGGTTATTGGGATCCCGCCCAGCATCCAGCAGCTGGTCCTGCAGCTCGTGGCGGGGATC
TTGCACCTGGGGAACATCAGTTTCTGTGAAGACGGGAATTACGCCCGAGTGGAGAGTGTGGACCTCCTGG
CCTTTCCCGCCTACCTGCTGGGCATTGACAGCGGGCGACTGCAGGAGAAGCTGACCAGCCGCAAGATGGA
CAGCCGCTGGGGCGGGCGCAGCGAGTCCATCAATGTGACCCTCAACGTGGAGCAGGCAGCCTACACCCGT
GATGCCCTGGCCAAGGGGCTCTATGCCCGCCTCTTCGACTTCCTCGTGGAGGCCATCAACCGTGCTATGC
AGAAACCCCAGGAAGAGTACAGCATCGGTGTGCTGGACATTTACGGCTTCGAGATCTTCCAGAAAAATGG
CTTCGAGCAGTTTTGCATCAACTTCGTCAATGAGAAGCTGCAGCAAATCTTTATCGAACTTACCCTGAAG
GCCGAGCAGGAGGAGTATGTGCAGGAAGGCATCCGCTGGACTCCAATCCAGTACTTCAACAACAAGGTCG
TCTGTGACCTCATCGAAAACAAGCTGAGCCCCCCAGGCATCATGAGCGTCTTGGACGACGTGTGCGCCAC
CATGCACGCCACGGGCGGGGGAGCAGACCAGACACTGCTGCAGAAGCTGCAGGCGGCTGTGGGGACCCAC
GAGCATTTCAACAGCTGGAGCGCCGGCTTCGTCATCCACCACTACGCTGGCAAGGTCTCCTACGACGTCA
GCGGCTTCTGCGAGAGGAACCGAGACGTTCTCTTCTCCGACCTCATAGAGCTGATGCAGACCAGTGAGCA
GGCCTTCCTCCGGATGCTCTTCCCCGAGAAGCTGGATGGAGACAAGAAGGGGCGCCCCAGCACCGCCGGC
TCCAAGATCAAGAAACAAGCCAACGACCTGGTGGCCACACTGATGAGGTGCACACCCCACTACATCCGCT
GCATCAAACCCAACGAGACCAAGAGGCCCCGAGACTGGGAGGAGAACAGAGTCAAGCACCAGGTGGAATA
CCTGGGCCTGAAGGAGAACATCAGGGTGCGCAGAGCCGGCTTCGCCTACCGCCGCCAGTTCGCCAAATTC
CTGCAGAGGTATGCCATTCTGACCCCCGAGACGTGGCCGCGGTGGCGTGGGGACGAACGCCAGGGCGTCC
AGCACCTGCTTCGGGCGGTCAACATGGAGCCCGACCAGTACCAGATGGGGAGCACCAAGGTCTTTGTCAA
GAACCCAGAGTCGCTTTTCCTCCTGGAGGAGGTGCGAGAGCGAAAGTTCGATGGCTTTGCCCGAACCATC
CAGAAGGCCTGGCGGCGCCACGTGGCTGTCCGGAAGTACGAGGAGATGCGGGAGGAAGCTTCCAACATCC
TGCTGAACAAGAAGGAGCGGAGGCGCAACAGCATCAATCGGAACTTCGTCGGGGACTACCTGGGGCTGGA
GGAGCGGCCCGAGCTGCGTCAGTTCCTGGGCAAGAGGGAGCGGGTGGACTTCGCCGATTCGGTCACCAAG
TACGACCGCCGCTTCAAGCCCATCAAGCGGGACTTGATCCTGACGCCCAAGTGTGTGTATGTGATTGGGC
GAGAGAAAGTGAAGAAGGGACCTGAGAAGGGCCAGGTGTGTGAAGTCTTGAAGAAGAAAGTGGACATCCA
GGCTCTGCGGGGAGTCTCCCTCAGCACGCGACAGGACGACTTCTTCATCCTCCAAGAGGATGCCGCCGAC
AGCTTCCTGGAGAGCGTCTTCAAGACCGAGTTTGTCAGCCTTCTGTGCAAGCGCTTCGAGGAGGCGACGC
GGAGGCCCCTGCCCCTCACCTTCAGCGACACACTACAGTTTCGGGTGAAGAAGGAGGGCTGGGGCGGTGG
CGGCACCCGCAGCGTCACCTTCTCCCGCGGCTTCGGCGACTTGGCAGTGCTCAAGGTTGGCGGTCGGACC
CTCACGGTCAGCGTGGGCGATGGGCTGCCCAAGAGCTCCAAGCCTACGCGGAAGGGAATGGCCAAGGGAA
AACCTCGGAGGTCGTCCCAAGCCCCTACCCGGGCGGCCCCTGCGCCCCCCAGAGGCATGGATCGCAATGG
GGTGCCCCCCTCTGCCAGAGGGGGCCCCCTGCCCCTGGAGATCATGTCTGGAGGGGGCACCCACAGGCCT
CCCCGGGGCCCTCCGTCCACATCCCTGGGAGCCAGCAGACGACCCCGGGCACGTCCGCCCTCAGAGCACA
ACACAGAATTCCTCAACGTGCCTGACCAGGGCATGGCCGGCATGCAGAGGAAGCGCAGCGTGGGGCAACG
GCCAGTGCCTGGTGTGGGCCGACCCAAGCCCCAGCCTCGGACACATGGTCCCAGGTGCCGGGCCCTATAC
CAGTACGTGGGCCAAGATGTGGACGAGCTGAGCTTCAACGTGAACGAGGTCATTGAGATCCTCATGGAAG
ATCCCTCGGGCTGGTGGAAGGGCCGGCTTCACGGCCAGGAGGGCCTTTTCCCAGGAAACTACGTGGAGAA
GATCTGA

Translation (1098 aa):
MGSKERFHWQSHNVKQSGVDDMVLLPQITEDAIAANLRKRFMDDYIFTYIGSVLISVNPFKQMPYFTDRE
IDLYQGAAQYENPPHIYALTDNMYRNMLIDCENQCVIISGESGAGKTVAAKYIMGYISKVSGGGEKVQHV
KDIILQSNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIY
YQLLEGASQEQRQNLGLMTPDYYYYLNQSDTYQVDGTDDRSDFGETLSAMQVIGIPPSIQQLVLQLVAGI
LHLGNISFCEDGNYARVESVDLLAFPAYLLGIDSGRLQEKLTSRKMDSRWGGRSESINVTLNVEQAAYTR
DALAKGLYARLFDFLVEAINRAMQKPQEEYSIGVLDIYGFEIFQKNGFEQFCINFVNEKLQQIFIELTLK
AEQEEYVQEGIRWTPIQYFNNKVVCDLIENKLSPPGIMSVLDDVCATMHATGGGADQTLLQKLQAAVGTH
EHFNSWSAGFVIHHYAGKVSYDVSGFCERNRDVLFSDLIELMQTSEQAFLRMLFPEKLDGDKKGRPSTAG
SKIKKQANDLVATLMRCTPHYIRCIKPNETKRPRDWEENRVKHQVEYLGLKENIRVRRAGFAYRRQFAKF
LQRYAILTPETWPRWRGDERQGVQHLLRAVNMEPDQYQMGSTKVFVKNPESLFLLEEVRERKFDGFARTI
QKAWRRHVAVRKYEEMREEASNILLNKKERRRNSINRNFVGDYLGLEERPELRQFLGKRERVDFADSVTK
YDRRFKPIKRDLILTPKCVYVIGREKVKKGPEKGQVCEVLKKKVDIQALRGVSLSTRQDDFFILQEDAAD
SFLESVFKTEFVSLLCKRFEEATRRPLPLTFSDTLQFRVKKEGWGGGGTRSVTFSRGFGDLAVLKVGGRT
LTVSVGDGLPKSSKPTRKGMAKGKPRRSSQAPTRAAPAPPRGMDRNGVPPSARGGPLPLEIMSGGGTHRP
PRGPPSTSLGASRRPRARPPSEHNTEFLNVPDQGMAGMQRKRSVGQRPVPGVGRPKPQPRTHGPRCRALY
QYVGQDVDELSFNVNEVIEILMEDPSGWWKGRLHGQEGLFPGNYVEKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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