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Report for CCDS22427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22427.1 Public Mus musculus 8 Ednra 23 108 98 CCDS HistoryNCBI Gene:13617Re-query CCDS DB by CCDS ID:22427.1Re-query CCDS DB by GeneID:13617See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22427.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034029.7 ENSMUSP00000034029.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034029.7Link to Ensembl Protein Viewer:ENSMUSP00000034029.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034029Re-query CCDS DB by Protein ID:ENSMUSP00000034029
Original member Current member NCBI NM_010332.2 NP_034462.1 Accepted alive Link to Nucleotide Sequence:NM_010332.2Link to Protein Sequence:NP_034462.1Re-query CCDS DB by Nucleotide ID:NM_010332Re-query CCDS DB by Protein ID:NP_034462Link to BLAST:NP_034462.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034462.1 427 Q61614 427 100% 0 0

Chromosomal Locations for CCDS 22427.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 77664976 77665116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77667323 77667431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77667799 77667932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77671517 77671669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77674913 77675111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77689069 77689196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77720028 77720447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1284 nt):
ATGAGTATCTTTTGCCTTGCGGCATACTTTTGGCTGACCATGGTGGGAGGCGTAATGGCTGACAATCCGG
AGAGATACAGCGCTAATCTAAGCAGCCACATGGAAGACTTCACCCCTTTTCCGGGGACGGAGATCAACTT
TCTGGGCACCACCCATCGACCCCCTAATTTGGCCCTGCCTAGCAATGGCTCAATGCACGGCTATTGCCCA
CAGCAGACTAAAATCACGACAGCTTTCAAATATATTAACACTGTGATATCCTGCACCATTTTCATCGTGG
GAATGGTGGGGAACGCAACTCTACTACGAATCATTTACCAAAACAAGTGTATGAGGAACGGCCCCAATGC
GCTCATAGCCAGCCTGGCCCTTGGAGACCTTATCTACGTGGTCATTGACCTCCCCATCAACGTGTTTAAG
CTCTTGGCAGGACGCTGGCCTTTCGACCACAATGATTTTGGAGTGTTTCTCTGCAAGCTGTTCCCCTTCC
TGCAGAAGTCCTCCGTGGGCATCACCGTCTTGAACCTCTGTGCTCTCAGTGTGGACAGGTACAGAGCAGT
GGCTTCCTGGAGCCGAGTTCAAGGAATCGGGATCCCCTTGATTACCGCCATTGAAATCGTCTCCATCTGG
ATTCTTTCCTTCATCTTGGCCATCCCGGAAGCAATCGGCTTCGTCATGGTACCCTTCGAATACAAGGGCG
AGCTGCATAGGACCTGCATGCTCAACGCCACGTCCAAGTTCATGGAGTTTTACCAAGATGTGAAGGACTG
GTGGCTCTTTGGGTTCTACTTCTGCATGCCCTTGGTGTGCACAGCAATCTTCTACACCCTCATGACCTGT
GAGATGCTCAACAGGAGGAACGGCAGCTTGCGGATCGCCCTTAGTGAGCACCTCAAACAGCGTCGAGAAG
TGGCAAAGACTGTCTTCTGCTTGGTTGTCATCTTCGCCCTGTGCTGGTTCCCTCTTCACTTAAGCCGCAT
TTTGAAGAAAACTGTATATGATGAGATGGATAAGAACCGGTGTGAACTGCTCAGCTTCTTGCTGCTAATG
GATTACATCGGCATTAACCTGGCAACCATGAATTCTTGCATAAACCCAATAGCTCTATATTTTGTGAGCA
AGAAATTCAAAAATTGTTTTCAGTCCTGCCTCTGTTGCTGTTGTCACCAGTCCAAAAGCCTCATGACCTC
GGTCCCCATGAATGGAACGAGTATCCAGTGGAAGAACCAAGAGCAGAACAACCACAACACGGAACGGAGC
AGCCACAAGGACAGCATGAACTAA

Translation (427 aa):
MSIFCLAAYFWLTMVGGVMADNPERYSANLSSHMEDFTPFPGTEINFLGTTHRPPNLALPSNGSMHGYCP
QQTKITTAFKYINTVISCTIFIVGMVGNATLLRIIYQNKCMRNGPNALIASLALGDLIYVVIDLPINVFK
LLAGRWPFDHNDFGVFLCKLFPFLQKSSVGITVLNLCALSVDRYRAVASWSRVQGIGIPLITAIEIVSIW
ILSFILAIPEAIGFVMVPFEYKGELHRTCMLNATSKFMEFYQDVKDWWLFGFYFCMPLVCTAIFYTLMTC
EMLNRRNGSLRIALSEHLKQRREVAKTVFCLVVIFALCWFPLHLSRILKKTVYDEMDKNRCELLSFLLLM
DYIGINLATMNSCINPIALYFVSKKFKNCFQSCLCCCCHQSKSLMTSVPMNGTSIQWKNQEQNNHNTERS
SHKDSMN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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