NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30322.1 Public Mus musculus X Cited1 23 108 98 CCDS HistoryNCBI Gene:12705Re-query CCDS DB by CCDS ID:30322.1Re-query CCDS DB by GeneID:12705See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30322.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050551.9 ENSMUSP00000051789.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050551.9Link to Ensembl Protein Viewer:ENSMUSP00000051789.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000050551Re-query CCDS DB by Protein ID:ENSMUSP00000051789
Original member Current member EBI ENSMUST00000101336.9 ENSMUSP00000098890.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101336.9Link to Ensembl Protein Viewer:ENSMUSP00000098890.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101336Re-query CCDS DB by Protein ID:ENSMUSP00000098890
Original member Current member NCBI NM_001276466.1 NP_001263395.1 Accepted alive Link to Nucleotide Sequence:NM_001276466.1Link to Protein Sequence:NP_001263395.1Re-query CCDS DB by Nucleotide ID:NM_001276466Re-query CCDS DB by Protein ID:NP_001263395Link to BLAST:NP_001263395.1
Original member Current member NCBI NM_001276473.1 NP_001263402.1 Accepted alive Link to Nucleotide Sequence:NM_001276473.1Link to Protein Sequence:NP_001263402.1Re-query CCDS DB by Nucleotide ID:NM_001276473Re-query CCDS DB by Protein ID:NP_001263402Link to BLAST:NP_001263402.1
Original member Current member NCBI NM_007709.4 NP_031735.1 Accepted alive Link to Nucleotide Sequence:NM_007709.4Link to Protein Sequence:NP_031735.1Re-query CCDS DB by Nucleotide ID:NM_007709Re-query CCDS DB by Protein ID:NP_031735Link to BLAST:NP_031735.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263395.1 203 P97769 203 100% 0 0
NP_001263402.1 203 P97769 203 100% 0 0
NP_031735.1 203 P97769 203 100% 0 0

Chromosomal Locations for CCDS 30322.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 102247457 102248008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102248563 102248622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGCCAACTATGTCGAGGCCTGCACTTGATGTCAAGGGTGGCACCACCTCTGGGAAGGAGGATGCCAACC
AGGAGATGAACTCTCTGGCCTACTCCAACCTTGGAGTGAAGGATCGCAAGGCAGTGACTGTCCTGCACTA
CCCCGGGGTCACCGCAAATGGAGCCAAAGCCAACGGAGTTCCCACTAGCTCCTCTGGATCGACATCTCCA
ATAGGCTCTCCTACTGCCACCCCTTCTTCCAAACCCCCATCCTTCAACCTGCATCCTACCCCTCACCTGA
TGGCCAGCATGCAGCTTCAGAAGCTTAATAGCCAGTACCAAGGGGCTGCGGCTACTGCTGCTGCTGCCCT
CACTGGTGCAGGCCTACCAGGGGAGGAAGAGCCCATGCAAAACTGGGTCACCGCCCCTCTGGTAGTGGGA
GGGTCTCCGGGATCTGTCTCTCCTCCTGCTGGTGCCCAGAGCCCTGCTCTCATTGATTCTGACCCGGTGG
ATGAGGAGGTGCTGATGTCTCTGGTGGTTGAATTGGGGCTAGACCGAGCCAATGAGCTTCCCGAGCTGTG
GCTGGGGCAGAATGAGTTTGATTTCACTGCAGATTTTCCCTCTGGCTGCTGA

Translation (203 aa):
MPTMSRPALDVKGGTTSGKEDANQEMNSLAYSNLGVKDRKAVTVLHYPGVTANGAKANGVPTSSSGSTSP
IGSPTATPSSKPPSFNLHPTPHLMASMQLQKLNSQYQGAAATAAAALTGAGLPGEEEPMQNWVTAPLVVG
GSPGSVSPPAGAQSPALIDSDPVDEEVLMSLVVELGLDRANELPELWLGQNEFDFTADFPSGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH