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Report for CCDS8900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8900.1 Public Homo sapiens 12 RAB5B 24 110 108 CCDS HistoryNCBI Gene:5869Re-query CCDS DB by CCDS ID:8900.1Re-query CCDS DB by GeneID:5869See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8900.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360299.10 ENSP00000353444.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360299.10Link to Ensembl Protein Viewer:ENSP00000353444.5Re-query CCDS DB by Nucleotide ID:ENST00000360299Re-query CCDS DB by Protein ID:ENSP00000353444
Original member Current member EBI ENST00000553116.5 ENSP00000450168.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000553116.5Link to Ensembl Protein Viewer:ENSP00000450168.1Re-query CCDS DB by Nucleotide ID:ENST00000553116Re-query CCDS DB by Protein ID:ENSP00000450168
Original member Current member NCBI NM_001252036.2 NP_001238965.1 Accepted alive Link to Nucleotide Sequence:NM_001252036.2Link to Protein Sequence:NP_001238965.1Re-query CCDS DB by Nucleotide ID:NM_001252036Re-query CCDS DB by Protein ID:NP_001238965Link to BLAST:NP_001238965.1
Original member Current member NCBI NM_002868.4 NP_002859.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002868.4Link to Protein Sequence:NP_002859.1Re-query CCDS DB by Nucleotide ID:NM_002868Re-query CCDS DB by Protein ID:NP_002859Link to BLAST:NP_002859.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001238965.1 215 P61020-1 215 100% 0 0
NP_002859.1 215 P61020-1 215 100% 0 0

Chromosomal Locations for CCDS 8900.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55986961 55987123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55989947 55990098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55990682 55990804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55991360 55991453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55992097 55992212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGACTAGCAGAAGCACAGCTAGGCCCAATGGGCAACCCCAGGCCAGCAAAATTTGCCAGTTCAAATTGG
TCCTGCTGGGAGAATCTGCAGTGGGAAAGTCAAGCCTGGTATTACGTTTTGTCAAAGGGCAGTTCCATGA
GTACCAGGAGAGCACCATTGGAGCGGCCTTCCTCACCCAGTCCGTTTGTCTAGATGACACAACAGTGAAG
TTTGAGATCTGGGACACAGCTGGGCAGGAGCGATATCACAGCTTAGCCCCCATGTACTACAGGGGTGCCC
AAGCTGCAATCGTGGTTTACGACATTACTAATCAGGAAACCTTTGCCCGAGCAAAGACATGGGTGAAGGA
ACTACAGCGACAGGCCAGTCCTAGCATCGTTATTGCCCTGGCAGGGAACAAAGCTGACCTGGCCAACAAA
CGTATGGTGGAGTATGAAGAGGCCCAGGCATATGCAGATGACAACAGCTTATTGTTCATGGAGACTTCAG
CCAAGACAGCTATGAACGTGAATGATCTCTTCCTGGCAATAGCTAAGAAGTTGCCAAAGAGTGAACCCCA
GAATCTGGGAGGTGCAGCAGGCCGAAGCCGGGGTGTGGATCTCCATGAACAGTCCCAGCAGAACAAGAGC
CAGTGTTGTAGCAACTGA

Translation (215 aa):
MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVK
FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK
RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKS
QCCSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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