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Report for CCDS28449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28449.1 Public Mus musculus 17 Zfp213 23 108 98 CCDS HistoryNCBI Gene:449521Re-query CCDS DB by CCDS ID:28449.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28449.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095606.4 ENSMUSP00000093266.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095606.4Link to Ensembl Protein Viewer:ENSMUSP00000093266.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095606Re-query CCDS DB by Protein ID:ENSMUSP00000093266
Original member Current member NCBI NM_001033496.3 NP_001028668.2 Accepted alive Link to Nucleotide Sequence:NM_001033496.3Link to Protein Sequence:NP_001028668.2Re-query CCDS DB by Nucleotide ID:NM_001033496Re-query CCDS DB by Protein ID:NP_001028668Link to BLAST:NP_001028668.2

Chromosomal Locations for CCDS 28449.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 23557660 23558312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23559383 23559548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23559634 23559704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23559985 23560102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23561146 23561544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGCATCCCTCCAGGAGCTCCAAGACCCTGCTCCCGGGGAGGAGGAAGGACTCATGATTGTGAAGGTGG
AAGACTGCTCCTGGGAACAGGAGCCTGTCCAGCCGGTGGACAGCCGGGATTCCGAAGCCTGCCGCCAGCG
GTTCCGACAGTTCTGCTTCAGGGATGCGGGTGGACCACACGAAGCCTTCAGCCAGCTGTGGGAGCTCTGT
TGCCGCTGGCTGCGGCCTGAGCTGCACAGCAAGGAGCAGATCCTGGAATTGCTGGTGCTGGAGCAGTTCC
TGGCTGTGCTACCAGGGGAGATCCAAGCCCAGCTTCAGAGACAGCACCTTGGGAGCGGTGAGGAAGCTGT
CGCTTTGGTGGAAGACATACAGAATCAGTCGTTGAAAGCCTGGCCACAGGATGAGCTCTCAGAGGCGGAG
CCGAAGGCAGCAGTCCAGGGACTCCAAGCCACAGGGTCTCCCCAGAAGACAGGGGTCCAGAAGCAACTCC
CTGCACTCCAAGGGCAGCGCAGCCATGCCCAGCTCCCTGTTCTTAAAGAGCGACAGACAGGAGAGGTGTT
GGATGGCTGCTTTGACTCTGCAGTTGATCTGCCTGGGAGACCCGAGCTGGGTCGTATCTCCCCATTCCAA
AAATCTGGGTCATTGGGAGACATCCCTTTCTATTGTTCCCGAGAAGAATGGAGCTCCCTGGACCCTGCTC
AGAGGAACCTCTTCTGGAACATCAAGAGAAAGAACTCGAGGGATGCTGCCCTTGGTTTGAGACCCAAAAG
CCAAAAGCCCCCTGCAGAGGAGGCAGCGACAGCATTGTTGGGACAGACTGAAGTGCCTATGTCCTGGAAT
CCCGAGGAGGCTGAGACCGAGGTCTGGGAGAGCGAGAACCCAATGAGGACAGCCCTGGACCCGCTGGTGG
GAGCGCGTCGGGGGCGGCCGCCCACTCACAGGCGCCAGTTTCAGAACTTATTGGCGGAGAAGCCCCACAG
CTGCGCGCAGTGCGGGAAGCGCTTCCGCTGGGGTTCAGACCTCGCCAGGCACCAGCGCACACACACCGGG
GAGAAGCCACACAAGTGCCCTGAATGCGACAAGAGCTTCCGCAGCTCTTCTGACCTAGTGCGCCACCAGG
GCGTGCACACGGGCGAGAAGCCCTTCTCCTGTTCCGAATGTGGCAAGAGCTTTAGCCGGAGCGCCTACCT
GGCTGACCACCAGCGCATCCACACGGGCGAGAAGCCCTTCAGCTGCAGCGAGTGTGGCAAGAGCTTCGCA
CTGCGCTCCTACCTGCTAGACCACAGGCGTGTGCACACGGGTGAGCGGCCATTCGGCTGTGGGGAGTGTG
ACAAGAGTTTCAAGCAGCGTGCACACCTCATTGCGCACCAGAGCTTACACTCAAAGATGGCCCAACCTGT
GGGGTGA

Translation (468 aa):
MASLQELQDPAPGEEEGLMIVKVEDCSWEQEPVQPVDSRDSEACRQRFRQFCFRDAGGPHEAFSQLWELC
CRWLRPELHSKEQILELLVLEQFLAVLPGEIQAQLQRQHLGSGEEAVALVEDIQNQSLKAWPQDELSEAE
PKAAVQGLQATGSPQKTGVQKQLPALQGQRSHAQLPVLKERQTGEVLDGCFDSAVDLPGRPELGRISPFQ
KSGSLGDIPFYCSREEWSSLDPAQRNLFWNIKRKNSRDAALGLRPKSQKPPAEEAATALLGQTEVPMSWN
PEEAETEVWESENPMRTALDPLVGARRGRPPTHRRQFQNLLAEKPHSCAQCGKRFRWGSDLARHQRTHTG
EKPHKCPECDKSFRSSSDLVRHQGVHTGEKPFSCSECGKSFSRSAYLADHQRIHTGEKPFSCSECGKSFA
LRSYLLDHRRVHTGERPFGCGECDKSFKQRAHLIAHQSLHSKMAQPVG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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