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Report for CCDS36207.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36207.1 Public Mus musculus 11 Nup88 23 108 98 CCDS HistoryNCBI Gene:19069Re-query CCDS DB by CCDS ID:36207.1Re-query CCDS DB by GeneID:19069See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36207.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108530.1 ENSMUSP00000104170.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108530.1Link to Ensembl Protein Viewer:ENSMUSP00000104170.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108530Re-query CCDS DB by Protein ID:ENSMUSP00000104170
Original member Current member NCBI NM_172394.3 NP_765982.2 Accepted alive Link to Nucleotide Sequence:NM_172394.3Link to Protein Sequence:NP_765982.2Re-query CCDS DB by Nucleotide ID:NM_172394Re-query CCDS DB by Protein ID:NP_765982Link to BLAST:NP_765982.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_765982.2 742 Q8CEC0-3 742 100% 0 0

Chromosomal Locations for CCDS 36207.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70943259 70943322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70943879 70943997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70944112 70944238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70944482 70944562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70944673 70944738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70944845 70944970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70945203 70945361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70947702 70947803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70950146 70950236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70951260 70951358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70954501 70954648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70956136 70956322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70958266 70958439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70961582 70961668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70965707 70965832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70967848 70968017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70969649 70969951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2229 nt):
ATGGCGGCTGCCGTGGGGCCCTTGGGCGATGGGGAGCTGTGGCAGAGCTGGCTTCCTAACCACGTCGTGT
TCTTGCGGCTCCGCGAGGGCGTAAGAAACCAGAGTCCAGCCGAAGCGGAGAAGCCAGCGGCTTCGACTTC
ACCCTCGTGCCCGTCTCTGCCGCCGCATTTGCCGACGAGAAACCTGGTCTTCGGCCTCGGAGGGGAACTG
TTTCTGTGGGACGCAGAAGGCAGCGCCTTCTTGGTGGTTCGCCTTCGAGGCCCCAGCGGTGGTGGCGTGG
AGCCTCCTCTCTCCCAGTATCAGAGATTACTCTGCATTAATCCACCCTTGTTTGAAATCCATCAAGTCTT
GTTGAGTCCAACCCAACATCATGTAGCACTTATCGGAAGTAAAGGACTTATGGCATTAGAATTACCTCAG
AGGTGGGGGAAGGACTCTGAATTTGAAGGTGGAAAAGCAACTGTGAATTGTAGCACCATCCCGATTGCTG
AGAGATTTTTCACCAGCTCTACCTCTCTGACTCTGAAGCATGCTGCATGGTATCCAAGTGAGATGCTGGA
TCCCCACATAGTGCTGTTGACATCAGACAACGTGATAAGAATTTATTCTCTCCGTGAGCCCCAGACACCC
ACTAAGGTGATTGTACTTTCAGAAGCAGAAGAGGAAAGTTTAATACTCAATAAAGGAAGAGCATATACAG
CGTCTCTAGGAGAGACTGCAGTGGCGTTTGACTTCGGGCCCCTGGTAACCGTCTCAAAGAATATATTTGA
ACAGAAAGACAGAGATGTGGTGGCGTATCCACTGTACATCCTGTATGAGAATGGGGAGACCTTCCTTACC
TACGTGAGCCTGTTACACAGCCCAGGGAATATTGGGAAGCTGTTGGGCCCACTGCCTATGCATCCTGCAG
CTGAAGATAACTACGGTTACGATGCCTGTGCTATACTCTGTTTGCCCTGTGTTCCAAATATCTTAGTAAT
TGCGACTGAGTCAGGAATGCTGTACCACTGTGTTGTACTAGAGGGAGAAGAAGAAGATGACCAAACGTTA
GAAAAGTCCTGGGATCCCAGGGCTGACTTCATCCCTTCTCTGTACGTGTTTGAGTGTGTTGAGTTAGAGC
TTGCCCTGAAGCTGGCATCTGGAGAGGACGATCCCTTTGCCTCTGACTTTTCCTGCCCAATTAAACTGCA
CAGAGATCCCAAGTGTCCTTCGAGATACCACTGCAGCCATGAAGCTGGCGTGCACAGTGTGGGGCTGACT
TGGATTCACAAACTGCACAAATTTCTTGGATCGGATGAAGAAGATAAGGATAGTTTACAAGAACTCACTG
CTGAGCAGAAATGCTTTGTGGAGCACATTCTTTGTACAAAGCCATTGCCGTGCAGGCAGCCAGCTCCAAT
TCGAGGATTCTGGATCGTCCCAGACATCCTGGGGCCCACAATGATCTGCATCACCAGTACCTATGAATGT
CTCATACGGCCTTTATTAAGTACAGTCCACCCAGCATCTCCTCCCCTGCTCTGTACCCAAGAAGATGCTG
AAGTTGCAGAGTCTCCACTGCGCATTCTGGCTGAAACTCCAGACTCCTTTGAGAAGCATATTAAAAGAAT
CTTGCAGCGTAGTGCTGCCAACCCAGCATTTCTCAAATCATCTGAAAAGGATTTGGCTCCCCCTCCCGAG
GAGTGTCTTCAGCTTATCAGCAGAGCCACCCAGGTGTTCCGAGAACAGTACATTCTCAAGCAGGACCTGG
CCAAGGAGGAGATTCAGCGGAGGGTCAAATTATTATGTGACCAAAAGAGGAAACAACTCGAAGATCTCAA
TTACTGTCGAGAGGAAAGGAAAAGTCTCCGGGAAATGGCTGAGCGCTTAGCTGACAAATATGAGGAAGCC
AAAGAAAAACAAGAAGATATCATGAACAGGATGAAAAAAGTGCTTCACAGTTTTCATGCTCAGCTCCCAG
TTCTCTCTGACAGTGAGAGAGACATGAAGAAAGAGTTACAGCTGATACCTGATCAACTGCGACATCTAGG
CAACGCCATCAAACAGGTTACTATGAAAAAAGATTATCAACAGCGGAAGATGGAAAAAGTGCTGAGTCCT
CAGAAACCCACCATTACTCTCAGTGCCTACCAGCGAAAGTGCATTCAGTCCATCCTGAAAGAAGAGGGTG
AACACATAAGGGAAATGGTGAAGCAAATCAATGACATCCGAAATCATGTCACCTTCTGA

Translation (742 aa):
MAAAVGPLGDGELWQSWLPNHVVFLRLREGVRNQSPAEAEKPAASTSPSCPSLPPHLPTRNLVFGLGGEL
FLWDAEGSAFLVVRLRGPSGGGVEPPLSQYQRLLCINPPLFEIHQVLLSPTQHHVALIGSKGLMALELPQ
RWGKDSEFEGGKATVNCSTIPIAERFFTSSTSLTLKHAAWYPSEMLDPHIVLLTSDNVIRIYSLREPQTP
TKVIVLSEAEEESLILNKGRAYTASLGETAVAFDFGPLVTVSKNIFEQKDRDVVAYPLYILYENGETFLT
YVSLLHSPGNIGKLLGPLPMHPAAEDNYGYDACAILCLPCVPNILVIATESGMLYHCVVLEGEEEDDQTL
EKSWDPRADFIPSLYVFECVELELALKLASGEDDPFASDFSCPIKLHRDPKCPSRYHCSHEAGVHSVGLT
WIHKLHKFLGSDEEDKDSLQELTAEQKCFVEHILCTKPLPCRQPAPIRGFWIVPDILGPTMICITSTYEC
LIRPLLSTVHPASPPLLCTQEDAEVAESPLRILAETPDSFEKHIKRILQRSAANPAFLKSSEKDLAPPPE
ECLQLISRATQVFREQYILKQDLAKEEIQRRVKLLCDQKRKQLEDLNYCREERKSLREMAERLADKYEEA
KEKQEDIMNRMKKVLHSFHAQLPVLSDSERDMKKELQLIPDQLRHLGNAIKQVTMKKDYQQRKMEKVLSP
QKPTITLSAYQRKCIQSILKEEGEHIREMVKQINDIRNHVTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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