NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS71696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71696.1 Public Mus musculus 5 Brat1 23 108 98 CCDS HistoryNCBI Gene:231841Re-query CCDS DB by CCDS ID:71696.1Re-query CCDS DB by GeneID:231841See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71696.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100505.2 ENSMUSP00000098074.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100505.2Link to Ensembl Protein Viewer:ENSMUSP00000098074.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100505Re-query CCDS DB by Protein ID:ENSMUSP00000098074
Original member Current member NCBI NM_001276287.1 NP_001263216.1 Accepted alive Link to Nucleotide Sequence:NM_001276287.1Link to Protein Sequence:NP_001263216.1Re-query CCDS DB by Nucleotide ID:NM_001276287Re-query CCDS DB by Protein ID:NP_001263216Link to BLAST:NP_001263216.1

Chromosomal Locations for CCDS 71696.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140705111 140705228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140705953 140706096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140710138 140710292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140711506 140711653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140712505 140712877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140713053 140713172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140714293 140714384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140714567 140714685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140714760 140714946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140715139 140715212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140716692 140716794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140716929 140717027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140717144 140717319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140717902 140718597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2604 nt):
ATGGTGCATTTTGCACTCTCGGGCCTAATTCCCGTAGCGGAGGGATGCGGGGGCGGGATTAGAACCCCTA
GGCTAACTCGCAGTCGCCGAGAGCGCACCTCTTACCCGGATTTGGGAGGAACTGCCTGCCTGATCATGGA
CCCAGAATGCTCCAGGCTCCTCCCGGCTCTCTGTGCTGTTTTGGCAGATCCCAGACAGCTGGTGGCAGAT
GACACCTGCTTGGAGAAACTGCTGGACTGGTTTAAAACAGTGACAGAGGCAGAGTCTAGCCTCCAACTAC
TACAGGACCATCCCTGCTTAATGGAGCTCCTGTCCCATGTGCTGAAGCCACAGGACGTGAGCCCTAGGGT
CCTCTCCTTTGCTCTGCGCCTTGTTGGGGTCTTCGCAGCCCAGGAAGACTGTTTTGAGTACCTTCAGCAG
GGAGAGTTGTTGCTGGGGCTCTTTGGGGAGTCAGGTGCCCCCGGCTGGGCAGCCTGGAGCATCCCAAGTG
TGCGCAGCGGCTGGATCCAGGGTCTGTGCTACCTGGCACACCACCCTAGCGCCCTGCACTTCCTGGCTGA
CAGTGGTGCTGTGGACACGCTCTTCTCCTTGCAGGGAGACCCCAGCCTGTTCGTCGCCTCAGCAGCCAGC
CAGCTCCTAGTACATATCCTGGCTCTGTCCATGCAAGGTGGAGCCCCAGGGTCCCCCGTCCCTGAAGCTG
CTGCTTGGCCTATGTGTGCCCAGAAGATTGTGAACCATGTGGATGAGTCCCTGCATGCCAAAGCCACCCC
CCAGGTCACACAGGCCTTGAATGTCCTGACTACGACCTTCGGGCGCTGCCATAACCCCTGGACAGGGGTC
CTCTGGGAGCGGCTAAGTCCCCCTGTTGCCCGCCTGTTTGAGAGAGACCCCATTCCAGCCGTGCACGCGC
TCATGGACCTTCTTCTTAGTGTGGCCAGGTCGCCTGTGTTGAATTTTGCAGCCTGTGGCCTGTGGGAGAT
GCTGGCCCAGACTCTGAGCCGCCTGAGCCCCATACAAGCTGGGCCTCTAGCCCTGGGGACCCTGAAACTT
CAGCACTGTCCCCAGGAATTGAGGACCCAGGCCTTTGGAGTCCTCCTACAGCCACTGGCCTGTATCCTGA
AAGCTACCACTCAGGCCCCTGGACCTCCAGGCTTGCTGGATGGGACTGTGGGTAGCTTGCTGACTGTGGA
TATACTCTTGGCTTCAAAGTCAGCCTGTGTGGGACTCCTTTGCCAGACTCTGGCTCACCTGGAGGAGCTG
CAGATGCTGCCCCAGTGCCCCTCACCCTGGCCACAGGTGCATCTGCTGCAAGCTGCTTTGACTATATTGC
ATCTCTGTGATGGCTCAGCGGACCCCAGCTCCAGTGCAGGAGGCCGTCTCTGTGGGACTCTGGGTGGCTG
TGTTCGTGTCCAGCGAGCAGCCCTTGACTTCTTGGGGACCCTGTCTCAGGGGACAAGCCCCCTGGAGTTG
GTTCTGGAGGTATTTGCTGTTCTCCTGAAGACCCTGGAGAGCCCAGAGTCCAGCCCCATGGTCCTAAAGA
AGGCCTTCCAGGCCACACTCAGATGGCTCCAGAACCCACACAAGACCCCCAGCAGCTCTGATCTCAGCTC
CGACGCCCTGCTGTTTCTCGGAGAGCTGTTCCCCATACTACAGAAGCGCCTATGCAGCCCATGTTGGGAG
GTGAGGGACTCTGCCCTGGAGTTCCTGACGCATCTGATCCGACACTGGGGAGGGCAGGCTGACTTCAGAG
AGGCACTGCGTTCCTCAGAAGTACCCACACTTGCCCTCCAGCTTCTCCAAGACCCAGAGAGTTACGTCCG
AGCAAGTGCCGTGGGTGCCGCTGGGCAGCTCTCCAGCCAGGGTCTGCAGGCCGCTCCCGCTAGCCCCGAG
AACTCGCAGGCCCAACAGGGCCTACTCATGGACCTTATGCATATCCTGTCCACTGACTCAGAGGGCTTCC
CTCGAAGGGCTGTGTTACGGGTCTTCACGGACTGGCTGAGGGATGGCCATGCTGACGTGGTTCGAGACAC
GGAGTGGTTCGTGGCCACTGTTCTCCAGGCAGTGAGCCGGGATCTGGACTGGGAGGTCCGAGTGCAGGGT
TTGGAGCTGGCACGGGTGTTCCTCACCCAGGCACTGGGCCAGCCCAGCCTCCACTGTCCCTATACAGTGG
GCCTGCCCAGGGCCTCCTCTCCCCGCCCACACCCGGAATTCTTGCAGACTCTCTGCCGTCTGCCGCTCTT
TGAGTTTGCCTTTTGTGCCTTGCTTGACTGTGACCGACCGGTGGCCCAAAAGGCCTGTGACCTGCTCCTC
TTCTTGAGGGACAAGACAGTTCCCTGCAGTAGCCCTCGGGAGGCAGGGGACAGCCCCAACTCAGCCTCAG
TGGAGGCTGCCCTGCAGAGGTGGCGGGAAGGAGAGCAGGCCCAGCCCCTAGGGGACCTGGATCCTGAGGC
CATGCTAGCCATCCTCAGGGCCTTAGACCTGGAGGGCCTGCAGGGCAGGCTGGCCAAGAGCAGCGACCAT
GTGGAGAAGAGCCCACAGTCCCTGCTGCAGGACATGCTGGCCACGGTGGGTGTGTTGGAGGAGAACGAAG
CTGACTGCTACTAA

Translation (867 aa):
MVHFALSGLIPVAEGCGGGIRTPRLTRSRRERTSYPDLGGTACLIMDPECSRLLPALCAVLADPRQLVAD
DTCLEKLLDWFKTVTEAESSLQLLQDHPCLMELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFEYLQQ
GELLLGLFGESGAPGWAAWSIPSVRSGWIQGLCYLAHHPSALHFLADSGAVDTLFSLQGDPSLFVASAAS
QLLVHILALSMQGGAPGSPVPEAAAWPMCAQKIVNHVDESLHAKATPQVTQALNVLTTTFGRCHNPWTGV
LWERLSPPVARLFERDPIPAVHALMDLLLSVARSPVLNFAACGLWEMLAQTLSRLSPIQAGPLALGTLKL
QHCPQELRTQAFGVLLQPLACILKATTQAPGPPGLLDGTVGSLLTVDILLASKSACVGLLCQTLAHLEEL
QMLPQCPSPWPQVHLLQAALTILHLCDGSADPSSSAGGRLCGTLGGCVRVQRAALDFLGTLSQGTSPLEL
VLEVFAVLLKTLESPESSPMVLKKAFQATLRWLQNPHKTPSSSDLSSDALLFLGELFPILQKRLCSPCWE
VRDSALEFLTHLIRHWGGQADFREALRSSEVPTLALQLLQDPESYVRASAVGAAGQLSSQGLQAAPASPE
NSQAQQGLLMDLMHILSTDSEGFPRRAVLRVFTDWLRDGHADVVRDTEWFVATVLQAVSRDLDWEVRVQG
LELARVFLTQALGQPSLHCPYTVGLPRASSPRPHPEFLQTLCRLPLFEFAFCALLDCDRPVAQKACDLLL
FLRDKTVPCSSPREAGDSPNSASVEAALQRWREGEQAQPLGDLDPEAMLAILRALDLEGLQGRLAKSSDH
VEKSPQSLLQDMLATVGVLEENEADCY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH