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Report for CCDS17382.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17382.1 Public Mus musculus 3 Slc33a1 23 108 98 CCDS HistoryNCBI Gene:11416Re-query CCDS DB by CCDS ID:17382.1Re-query CCDS DB by GeneID:11416See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17382.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029402.14 ENSMUSP00000029402.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029402.14Link to Ensembl Protein Viewer:ENSMUSP00000029402.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029402Re-query CCDS DB by Protein ID:ENSMUSP00000029402
Original member Current member EBI ENSMUST00000161659.7 ENSMUSP00000123986.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161659.7Link to Ensembl Protein Viewer:ENSMUSP00000123986.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161659Re-query CCDS DB by Protein ID:ENSMUSP00000123986
Original member Current member EBI ENSMUST00000160883.1 ENSMUSP00000125713.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160883.1Link to Ensembl Protein Viewer:ENSMUSP00000125713.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160883Re-query CCDS DB by Protein ID:ENSMUSP00000125713
Original member Current member NCBI NM_001272035.1 NP_001258964.1 Accepted alive Link to Nucleotide Sequence:NM_001272035.1Link to Protein Sequence:NP_001258964.1Re-query CCDS DB by Nucleotide ID:NM_001272035Re-query CCDS DB by Protein ID:NP_001258964Link to BLAST:NP_001258964.1
Original member Current member NCBI NM_015728.5 NP_056543.2 Accepted alive Link to Nucleotide Sequence:NM_015728.5Link to Protein Sequence:NP_056543.2Re-query CCDS DB by Nucleotide ID:NM_015728Re-query CCDS DB by Protein ID:NP_056543Link to BLAST:NP_056543.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258964.1 550 Q99J27 550 100% 0 0
NP_056543.2 550 Q99J27 550 100% 0 0

Chromosomal Locations for CCDS 17382.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 63943249 63943416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63944566 63944781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63947569 63947686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63948072 63948256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63953814 63954004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63963416 63964190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGTCACCGACCATCTCCCACAAGGACAGCAGTCGGCAGCGGCGGTCAGGCATGTTTAGCCACGCTCTGG
ATATGAAGAGTGGCCCGCTGCCACCGGGCGGCTGGGATGACAGTCGCCGAGACTCGGTGGGCGGGGAGGG
GGACCGGGAAGTTCTTCTAGGTGATGCCGGCCCTGGTGACTTACCTAAAGCCCCGCGGAGCTATAGATCC
GAACTAAGTAGCATTTTGTTACTACTCTTTCTTTACGTGCTTCAGGGCATTCCCTTAGGCCTGGCGGGGA
GCATCCCCCTCATTTTGCAAAGCAAAAATGTTAGCTATACAGATCAGGCTTTCTTCAGTTTTGTCTTCTG
GCCATTCAGTCTTAAGTTGCTCTGGGCTCCCTTGGTTGATGCCGTCTACTTTAAGAACTTTGGTCGTCGC
AAGTCCTGGCTTGTCCCTACTCAGTATACACTAGGAATCTTCATGATATATTTATCCACTCAAGTGGACC
GTTTGCTCGGAAATATTGATGGCAGAACACCGGATGTAGTTGCTCTCACTGTGACATTCTTCTTGTTTGA
ATTCCTGGCTGCCACACAGGACATCGCTGTGGATGGTTGGGCATTAACTATGTTATCCCGGGAAAACGTG
GGCTATGCTTCGACATGCAATTCTGTGGGCCAAACAGCTGGCTACTTTTTGGGCAATGTTTTATTTTTGG
CTCTTGAATCTGCTGACTTTTGTAACAAATACTTGCGGTTTCAGCCTCAACCCAGGGGAATCGTTACCCT
TTCAGATTTTCTATTTTTCTGGGGAACTGTATTTTTAATAACAACAACATTAGTAGCCCTTCTGAAAAAA
GAAAACAGAGAAGCGTCAATAGTAAAAGAAGAGACCCAAGGGATCACAGACACTTACAAGCTGCTATTCT
CAATTATAAAAATGCCAGCAGTTCTGGCCTTTTGCCTTCTGATTCTAACGTCAAAGATTGGCTTCTCAGC
AGCTGATGCTGTGACAGGCCTGAAGCTGGTGGAAGAAGGGGTGCCTAAAGAGCACCTGGCCTTACTAGCT
GTCCCAATGGTCCCTCTGCAGATAATCCTGCCACTCCTCATCAGCAAGTATACTGCAGGTCCCCAGCCTC
TGAACATATTTTACAAAGCCATGCCCTACAGATTATTGCTTGGATTAGAATATGCTCTACTTGTTTGGTG
GACTCCTAAAGTAGAGCATCAAGGAGGATTCCCTCTATATTACTATATTATAGTGCTGCTGAGTTATGCA
TTACATCAGGTCACTCTGTACAGCATGTATGTGTCGATAATGGCTTTCAATGCCAAGGTCAGTGATCCTC
TTATTGGGGGAACATACATGACCCTTTTAAACACTGTGTCTAATCTGGGAGGAAACTGGCCTTCTACAGT
GGCTCTTTGGCTAGTGGATCCCCTCACAGTGAAGGAATGTGTAGGAGCTTCAAACCAGAATTGTCGGACA
CCTGATGCTATCGAACTTTGCAAAAAACTTGGAGGCTCGTGTGTTACAGCTCTGGATGGTTACTATGTGG
AATCCATTATCTGTGTTCTCATTGGATTTGGTTGGTGGTTCTTTCTTGGTCCAAAATTTAAAAAGTTACA
GGATGAAGGACCATCCTCATGGAAGTGCAAAAGGAACAACTGA

Translation (550 aa):
MSPTISHKDSSRQRRSGMFSHALDMKSGPLPPGGWDDSRRDSVGGEGDREVLLGDAGPGDLPKAPRSYRS
ELSSILLLLFLYVLQGIPLGLAGSIPLILQSKNVSYTDQAFFSFVFWPFSLKLLWAPLVDAVYFKNFGRR
KSWLVPTQYTLGIFMIYLSTQVDRLLGNIDGRTPDVVALTVTFFLFEFLAATQDIAVDGWALTMLSRENV
GYASTCNSVGQTAGYFLGNVLFLALESADFCNKYLRFQPQPRGIVTLSDFLFFWGTVFLITTTLVALLKK
ENREASIVKEETQGITDTYKLLFSIIKMPAVLAFCLLILTSKIGFSAADAVTGLKLVEEGVPKEHLALLA
VPMVPLQIILPLLISKYTAGPQPLNIFYKAMPYRLLLGLEYALLVWWTPKVEHQGGFPLYYYIIVLLSYA
LHQVTLYSMYVSIMAFNAKVSDPLIGGTYMTLLNTVSNLGGNWPSTVALWLVDPLTVKECVGASNQNCRT
PDAIELCKKLGGSCVTALDGYYVESIICVLIGFGWWFFLGPKFKKLQDEGPSSWKCKRNN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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