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Report for CCDS16662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16662.1 Public Mus musculus 2 Shf 23 108 98 CCDS HistoryNCBI Gene:435684Re-query CCDS DB by CCDS ID:16662.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16662.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048635.12 ENSMUSP00000045135.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048635.12Link to Ensembl Protein Viewer:ENSMUSP00000045135.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048635Re-query CCDS DB by Protein ID:ENSMUSP00000045135
Original member Current member EBI ENSMUST00000110531.8 ENSMUSP00000106160.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110531.8Link to Ensembl Protein Viewer:ENSMUSP00000106160.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110531Re-query CCDS DB by Protein ID:ENSMUSP00000106160
Original member Current member NCBI NM_001013829.2 NP_001013851.2 Accepted alive Link to Nucleotide Sequence:NM_001013829.2Link to Protein Sequence:NP_001013851.2Re-query CCDS DB by Nucleotide ID:NM_001013829Re-query CCDS DB by Protein ID:NP_001013851Link to BLAST:NP_001013851.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013851.2 238 Q8CG80-1 238 100% 0 0

Chromosomal Locations for CCDS 16662.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 122349353 122349539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122353765 122353884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122354029 122354197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122357083 122357289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122359448 122359481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGAGCCCTACGAGGCCCAAAAGATGATGGCTGAGATCCGGGGTTCTAAGGAGACTGCAGCTCAACCCC
TACCTCTCTATGACACACCCTATGAGCCAGAAGATGAGGGGGCCAGCCCAGAAGGTGAGGGGACTCCCTG
GCCCAGGGAGTCGCGCCTGCCAGAGGATGACGAGAGGCCTCCAGAAGAGTATGACCAGCCCTGGGAGTGG
AAGAAGGAACGGATTTCCAAAGCCTTTGCTGCCCAGTTTGAAGGATCGGAGAACTGCCTGTCACCTGGCC
GGGAGGAGAAGGGGCGGCTACCTCCCAGGCTATCTGCTGGGAACCCCAAGTCAGCCAAGCCCCTAGGCAT
GGAACCCAGCAGCCCCCTGGGGGAGTGGACAGATCCAGCACTGCCTCTGGAAAACCAGGTCTGGTACCAC
GGGGCCATCAGCCGAACAGATGCCGAGAACCTGCTCAGGCTGTGCAAAGAGGCCAGCTACCTGGTGCGCA
ACAGTGAGACCAGCAAAAATGACTTCTCTCTCTCCCTCAAGAGCAGTCAGGGCTTCATGCACATGAAGCT
GTCCCGGACTAAGGAACACAAGTATGTGTTGGGCCAGAACAGCCCACCCTTCAGCAGCGTCCCTGAAATC
GTGCACCACTATGCCAGCCGCAAGCTGCCCATTAAGGGAGCGGAACACATGTCCCTGCTCTACCCTGTGG
CCATCCGGACTCTGTAG

Translation (238 aa):
MEPYEAQKMMAEIRGSKETAAQPLPLYDTPYEPEDEGASPEGEGTPWPRESRLPEDDERPPEEYDQPWEW
KKERISKAFAAQFEGSENCLSPGREEKGRLPPRLSAGNPKSAKPLGMEPSSPLGEWTDPALPLENQVWYH
GAISRTDAENLLRLCKEASYLVRNSETSKNDFSLSLKSSQGFMHMKLSRTKEHKYVLGQNSPPFSSVPEI
VHHYASRKLPIKGAEHMSLLYPVAIRTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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