NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS56994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56994.1 Public Mus musculus 15 Shisa8 23 108 98 CCDS HistoryNCBI Gene:435145Re-query CCDS DB by CCDS ID:56994.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56994.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179269.2 ENSMUSP00000137002.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179269.2Link to Ensembl Protein Viewer:ENSMUSP00000137002.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179269Re-query CCDS DB by Protein ID:ENSMUSP00000137002
Original member NCBI NM_001207021.1 NP_001193950.1 Updated not alive Link to Nucleotide Sequence:NM_001207021.1Link to Protein Sequence:NP_001193950.1Re-query CCDS DB by Nucleotide ID:NM_001207021Re-query CCDS DB by Protein ID:NP_001193950
Current member NCBI NM_001207021.2 NP_001193950.1 Accepted alive Link to Nucleotide Sequence:NM_001207021.2Link to Protein Sequence:NP_001193950.1Re-query CCDS DB by Nucleotide ID:NM_001207021Re-query CCDS DB by Protein ID:NP_001193950Link to BLAST:NP_001193950.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193950.1 399 J3QNX5 399 100% 0 0

Chromosomal Locations for CCDS 56994.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 82207153 82207547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82207751 82207897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82208463 82208596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82211889 82212412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGGAGCGCGCTGGGGCGCGGGGACAGCGCTGTGGCCGGCGCTCGCATGGGCTCCCGCTCGCACTCCGAC
TGGCGCTGCTGCTGGCAGGGTCGCCGTCGGGCCGCGCGGGGGCTCCCGAGGAGCAGGAGATCGCAGGGTC
CGGTACCGTGGCACCGGCGGGAGGCGACCGCTGCCGCGGCTATTACGACGTGATGGGCCAGTGGGACCCG
CCCTTCAACTGCAGCTCGGGCGTCTACAGCTTCTGCTGCGGCACGTGCGGCTACCGCTTCTGTTGCCACG
ACGGCCCGCGCCGCCTGGACCAGAGCCGCTGCTCCAACTACGACACACCGGCCTGGGTGCAGACTGGCCG
GCCGCCCGCCCGCGCCCGTGACACCGCCGCCCCGCGCGACCCGGCCCGGGAGCGCAGCCACACTGCGGTC
TACGCGGTGTGCGGTGTCGCCGCTCTACTCGTGCTGGTCGGCATCGGGGCGCGCCTGGGCCTGGAGAGAG
CGCACAGCCCCCGCGCTCGGCGCACGGTGACCAGGACACTGACAGAACTTCTCAAGCAGCCAGGTCCCCA
AGAACCACTGCCTCCGCCTCTGGGTCCACCCTTGGGTAACTGCGTCCAGGTACAAATGGGTGACGGTGTT
CTCCGGGGTTCCCCCCACAACAGCACAGACAAGAAACGCCTCAATAATGCGCCTCTGGGGTCCGCCACAC
CGGGACCCCCGCGCGGCCCGAGGCTGCAGGGTGGTGGCAGCCTGACGTTGCAGCCTGACTATGCCAAGTT
CGCTACCCTCAAAGCAGCTGCGCTCAAGGCTACAGAGGTTGCACCCCAGGACTTCTATCAACGTTTTCCC
TCTACGGAGACGGGCCCGCGGACCCTCCCTGCGCGGGTCCCGCGGCCTCCGGAGGACTTGCCTGCGTTGC
TCGACGCCTGTCCCTGGGCCCCTCCGGGTTACGTACCTCCGGCCGGTCCTGTCTCGTCGGTCCCTTATGC
CGCCTGGACCGCGGGCCGCCCCGCGAGGCCGCTCCCCCGTAGCCACTTGGTGGCTCAGGTCTCCCCAGCT
CCCCGGCGGCCCAACCACGCGCCACGGCGCCAGTTCAGCGTGGAGAAGCTGCCCGAGGCCTTCAGCGCGC
AGCAGGCGAGCTTTTACAGCAGCGCGGGCAGAGGACCCCGGCACCTGAGCACCAACAGCAAAGCCGAGGT
CACGGTCTAG

Translation (399 aa):
MERAGARGQRCGRRSHGLPLALRLALLLAGSPSGRAGAPEEQEIAGSGTVAPAGGDRCRGYYDVMGQWDP
PFNCSSGVYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRPPARARDTAAPRDPARERSHTAV
YAVCGVAALLVLVGIGARLGLERAHSPRARRTVTRTLTELLKQPGPQEPLPPPLGPPLGNCVQVQMGDGV
LRGSPHNSTDKKRLNNAPLGSATPGPPRGPRLQGGGSLTLQPDYAKFATLKAAALKATEVAPQDFYQRFP
STETGPRTLPARVPRPPEDLPALLDACPWAPPGYVPPAGPVSSVPYAAWTAGRPARPLPRSHLVAQVSPA
PRRPNHAPRRQFSVEKLPEAFSAQQASFYSSAGRGPRHLSTNSKAEVTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH