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Report for CCDS41005.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41005.1 Public Mus musculus X Xlr4a 23 108 98 CCDS HistoryNCBI Gene:434794Re-query CCDS DB by CCDS ID:41005.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41005.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078775.12 ENSMUSP00000077831.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078775.12Link to Ensembl Protein Viewer:ENSMUSP00000077831.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078775Re-query CCDS DB by Protein ID:ENSMUSP00000077831
Original member Current member NCBI NM_001081642.1 NP_001075111.1 Accepted alive Link to Nucleotide Sequence:NM_001081642.1Link to Protein Sequence:NP_001075111.1Re-query CCDS DB by Nucleotide ID:NM_001081642Re-query CCDS DB by Protein ID:NP_001075111Link to BLAST:NP_001075111.1

Chromosomal Locations for CCDS 41005.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73074649 73074717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73074835 73074930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73076733 73076831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73078025 73078124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73078976 73079093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73080720 73080788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73081474 73081570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGGCTTCCAAAATCAAGGGCAGACCTCCCAAGCAACCAAAGGTGACTCCTGCTCTGCCATCTGACGATT
CACAGCAGCTTCATGAAAATAACCCAGGAAACAATCTGGCCCTTGAAACTTGTGGGGAAAGCAGTTCTTC
CCATGGAACAGGTGGACCAAAGCCAGGGCCCAGTAAGAAAACTCTAAATGAAAGGAAGAGAAAGTATGGG
GTGAGTGTAAATAAAACTGTCCAAAACATTGAGTGGAATGTTGACCACTTCTTGAAAGTCCAGCATGAGC
GAAGGCAGGAACTTTATAAGGACTATTCTCATCAGTTTTTGACTTTGGTTATGATGTGGAATATAGATGT
AGACCAAATCAAGAAACAGGCTGGAAAACTCTCTGATATACTTGATGAGCAACAAAAGCTTTTTCAACAA
TTTCAAAGTATTCATATGCAGAAAATAGAAGAATTTAAGGAGTTATGTGATCGACACTTGAAGAATCTAC
AGGCCATTAAGTGTTGTCGCCGAAAAGCTATTATTGAGGAAGCCAGAAAACTAATGGACTACTTGGAAAA
GACAGTTACTGAAGAAACTGTTCACGTAAACAAGCAGGAAGCAAAGGATGGTGTTCAATCATCACTTCTA
TCCCTGCTAATCTCGTAA

Translation (215 aa):
MASKIKGRPPKQPKVTPALPSDDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYG
VSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQ
FQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKTVTEETVHVNKQEAKDGVQSSLL
SLLIS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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