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Report for CCDS40148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40148.1 Public Mus musculus 7 Trim72 23 108 98 CCDS HistoryNCBI Gene:434246Re-query CCDS DB by CCDS ID:40148.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40148.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081042.5 ENSMUSP00000079832.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081042.5Link to Ensembl Protein Viewer:ENSMUSP00000079832.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000081042Re-query CCDS DB by Protein ID:ENSMUSP00000079832
Original member Current member EBI ENSMUST00000106248.7 ENSMUSP00000101855.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106248.7Link to Ensembl Protein Viewer:ENSMUSP00000101855.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106248Re-query CCDS DB by Protein ID:ENSMUSP00000101855
Original member Current member NCBI NM_001079932.3 NP_001073401.1 Accepted alive Link to Nucleotide Sequence:NM_001079932.3Link to Protein Sequence:NP_001073401.1Re-query CCDS DB by Nucleotide ID:NM_001079932Re-query CCDS DB by Protein ID:NP_001073401Link to BLAST:NP_001073401.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073401.1 477 Q1XH17 477 100% 0 0

Chromosomal Locations for CCDS 40148.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 128004484 128004873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128007606 128007701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128007787 128008017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128008452 128008474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128009072 128009190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128009887 128010461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGTCGGCTGCACCCGGCCTTCTGCGTCAGGAACTGTCCTGCCCACTGTGCTTGCAGCTGTTCGATGCGC
CAGTGACGGCTGAGTGTGGCCACAGTTTCTGCCGTGCCTGCCTGATCCGGGTGGCAGGGGAGCCTGCTGC
GGACGGCACAGTTGCCTGTCCCTGTTGTCAGGCACCTACACGGCCGCAGGCTCTAAGCACTAACCTCCAG
TTGTCACGCCTTGTGGAGGGTTTGGCGCAAGTGCCCCAAGGCCACTGCGAGGAACACCTGGATCCACTGA
GCATCTACTGCGAGCAGGACCGCACACTTGTGTGTGGTGTGTGTGCCTCGCTCGGTTCTCACCGTGGTCA
TCGTCTCCTGCCTGCCGCTGAAGCCCAAGCACGCCTCAAGACACAGCTTCCACAGCAGAAGATGCAGCTG
CAGGAGGCATGCATGCGCAAGGAGAAGACTGTAGCGGTGCTGGAGCATCAGCTGGTGGAGGTGGAGGAGA
CAGTGCGCCAGTTCCGGGGAGCTGTCGGGGAGCAGCTGGGGAAGATGCGGATGTTCCTGGCTGCCCTAGA
AAGTTCTCTGGACCGTGAAGCAGAAAGGGTTCGGGGTGATGCTGGGGTTGCCTTGCGTCGGGAGCTGTCA
AGCCTGAACTCTTACCTAGAGCAACTGAGGCAGATGGAGAAGGTGCTGGAGGAGGTGGCTGACAAGCCAC
AGACAGAATTCCTCATGAAATTCTGCCTGGTAACCAGCAGGCTGCAGAAGATCCTGTCAGAGTCACCACC
ACCGGCAAGGCTAGATATCCAGCTGCCTGTCATCTCAGATGACTTCAAATTCCAGGTGTGGAAGAAGATG
TTCCGGGCTCTGATGCCAGCGCTGGAGGAACTGACTTTTGACCCCAGCTCTGCGCACCCGAGCCTGGTGG
TGTCCTCCTCTGGTCGCCGAGTGGAGTGCTCAGACCAGAAGGCGCCGCCAGCGGGAGAAGACACGCGTCA
GTTCGACAAGGCAGTAGCGGTGGTGGCGCAGCAGCTGCTGTCACAGGGCGAGCACTATTGGGAGGTGGAG
GTGGGCGACAAACCACGCTGGGCCCTGGGAGTGATGGCGGCTGACGCTTCCCGCCGTGGCCGGCTGCACG
CGGTGCCCTCACAGGGGCTGTGGCTGCTGGGTCTGCGCGATGGCAAGATCCTGGAGGCGCACGTGGAGGC
CAAGGAGCCGCGGGCACTGCGCACCCCAGAGAGGCCTCCGGCGCGCATTGGCCTCTACCTAAGCTTCGCA
GATGGCGTCCTGGCTTTCTATGATGCGAGCAACCCCGACGTACTTACGCCAATCTTTTCTTTCCACGAGC
GTCTGCCCGGGCCGGTGTACCCCATCTTTGACGTGTGCTGGCACGACAAGGGCAAGAATGCCCAGCCCCT
GCTGCTTGTGGGGCCGGAGCAGGAACAGGCCTGA

Translation (477 aa):
MSAAPGLLRQELSCPLCLQLFDAPVTAECGHSFCRACLIRVAGEPAADGTVACPCCQAPTRPQALSTNLQ
LSRLVEGLAQVPQGHCEEHLDPLSIYCEQDRTLVCGVCASLGSHRGHRLLPAAEAQARLKTQLPQQKMQL
QEACMRKEKTVAVLEHQLVEVEETVRQFRGAVGEQLGKMRMFLAALESSLDREAERVRGDAGVALRRELS
SLNSYLEQLRQMEKVLEEVADKPQTEFLMKFCLVTSRLQKILSESPPPARLDIQLPVISDDFKFQVWKKM
FRALMPALEELTFDPSSAHPSLVVSSSGRRVECSDQKAPPAGEDTRQFDKAVAVVAQQLLSQGEHYWEVE
VGDKPRWALGVMAADASRRGRLHAVPSQGLWLLGLRDGKILEAHVEAKEPRALRTPERPPARIGLYLSFA
DGVLAFYDASNPDVLTPIFSFHERLPGPVYPIFDVCWHDKGKNAQPLLLVGPEQEQA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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