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Report for CCDS18145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18145.1 Public Mus musculus 4 Ncbp1 23 108 98 CCDS HistoryNCBI Gene:433702Re-query CCDS DB by CCDS ID:18145.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18145.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030014.8 ENSMUSP00000030014.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030014.8Link to Ensembl Protein Viewer:ENSMUSP00000030014.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030014Re-query CCDS DB by Protein ID:ENSMUSP00000030014
Original member NCBI NM_001033201.3 NP_001028373.2 Updated not alive Link to Nucleotide Sequence:NM_001033201.3Link to Protein Sequence:NP_001028373.2Re-query CCDS DB by Nucleotide ID:NM_001033201Re-query CCDS DB by Protein ID:NP_001028373
Current member NCBI NM_001033201.4 NP_001028373.2 Accepted alive Link to Nucleotide Sequence:NM_001033201.4Link to Protein Sequence:NP_001028373.2Re-query CCDS DB by Nucleotide ID:NM_001033201Re-query CCDS DB by Protein ID:NP_001028373Link to BLAST:NP_001028373.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028373.2 790 Q3UYV9 790 100% 0 0

Chromosomal Locations for CCDS 18145.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 46138853 46138886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46144785 46144873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46145374 46145474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46147379 46147535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46149862 46149969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46150639 46150760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46152016 46152085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46152910 46153125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46155750 46155847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46156760 46156823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46157823 46157933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46159659 46159723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46161261 46161323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46162092 46162166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46162961 46163064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46165166 46165288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46166738 46166840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46167302 46167395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46168451 46168554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46169129 46169243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46169945 46170073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46170472 46170585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46171893 46172006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGTCGCGGAGGCGGCACAGCTACGAGAACGATGGTGGACAACCTCACAAAAGGAGGAAGACGTCTGATG
CA
AATGAAACTGAAGATCATTTGGAATCTTTAATATGCAAAGTAGGGGAAAAGAGTGCCTGTTCTTTAGA
G
AGCAATCTCGAAGGCCTGGCTGGTGTTTTAGAAGCTGATCTTCCTAACTACAAGAGCAAGATCTTAAGG
CTC
CTTTGTACAGTTGCACGTCTGTTACCTGAGAAGCTAACAATTTACACAACATTAGTTGGACTGCTGA
AT
GCCAGGAATTACAACTTTGGAGGAGAATTTGTAGAAGCTATGATTCGTCAACTTAAAGAATCACTAAA
A
GCAAATAACTATAATGAAGCTGTATATTTGGTCCGTTTTCTGTCTGATCTTGTGAATTGTCATGTGATC
GCT
GCCCCGTCTATGGTTGCTATGTTTGAGAATTTTGTAAGTGTAACTCAGGAAGAAGATGTGCCTCAAG
TG
CGACGGGATTGGTATGTGTATGCGTTTCTGTCATCCTTGCCCTGGGTTGGAAAGGAGTTGTATGAAAA
A
AAAGATGCAGAAATGGACCGAATCTTCTCCACCACTGAAAGCTATCTCAAAAGACGCCAGAAGACTCAC
GTG
CCCATGTTACAAGTCTGGACTGCCGACAAACCACATCCACAGGAAGAGTATTTAGATTGCCTGTGGG
CC
CAGATTCAGAAATTGAAAAAAGACCGGTGGCAGGAGAGGCACATCCTAAGACCCTACCTTGCCTTTGA
C
AGCATCCTCTGTGAAGCTCTGCAGCACAACCTGCCTCCTTTCACACCGCCGCCCCACACAGAGGACTCC
GTG
TACCCGATGCCCAGGGTCATCTTCAGGATGTTTGACTACACAGACGACCCAGAAGGCCCTGTTATGC
CA
GGGAGCCATTCGGTGGAGAGGTTTGTCATCGAGGAGAATCTTCACTGCATCATCAAGTCCTACTGGAA
G
GAAAGGAAGACTTGCGCTGCCCAGCTGGTGAGCTATCCAGGGAAGAACAAGATCCCCTTGAACTACCAC
ATA
GTGGAGGTGATCTTTGCAGAGCTGTTTCAGCTTCCAGCGCCTCCTCACATTGACGTGATGTACACTA
CA
CTGCTAATCGAACTGTGCAAACTTCAGCCGGGCTCGCTGCCCCAAGTGCTTGCGCAGGCGACTGAGAT
G
CTGTACATGCGTCTGGACACGATGAGTACCACGTGTGTTGACAGGTTTATTAATTGGTTTTCTCATCAT
CTA
AGTAATTTTCAATTCCGTTGGAGCTGGGAAGATTGGTCAGATTGTCTTACTCAGGATCTTGAAAGTC
CC
AAACCAAAGTTTGTAAGGGAAGTTCTAGAGAAGTGCATGAGGTTGTCTTACCATCAACATATATTAGA
T
ATTGTTCCTCCCACCTTCTCAGCTCTGTGTCCTGCAAACCCAACCTGCATTTACAAGTATGGAGATGAA
AGT
AGCAATTCTCTTCCTGGACATTCCGTGGCACTCTGTTTATCTGTTGCTTTTAAAAGTAAGGCAACCA
AC
GATGAGATCTTCAGCATTCTGAAGGACGTACCAAACCCTAACCAGGTTGATGATGATGATGAAGGGTT
C
AGATTTAACCCTTTGAAAATAGAGGTCTTTGTCCAGACTCTGCTGCACTTAGCTGCCAAGTCCTTCAGT
CAC
TCCTTCAGTGCTCTTGCAAAGTTTCATGAAGTCTTCAAAACTCTGGCGGAGAGTGATAAGGGGAAGC
TG
CACGTGCTGAGAGTCATGTTTGAAGTGTGGAGGAACCATCCACAGATGATTGCTGTGCTGGTTGATAA
G
ATGATTCGTACGCAGATTGTCGACTGTGCAGCAGTAGCAAACTGGATCTTCTCATCGGAGCTGTCTCGG
GAC
TTTACGAGGTTGTTTGTGTGGGAAATTTTGCACTCTACAATTCGTAAGATGAACAAACATGTTCTGA
AG
ATCCAGAAAGAGCTAGAAGAAGCTAAAGAGAAACTGGCGAGGCAGCACAAACGACGCAGTGATGACGA
C
GACAGGAGCAGTGACAGGAAGGACGGTGCCCTGGAGGAGCAAATAGAAAGGCTGCAGGAGAAGGTGGAG
GCT
GCTCAGAGTGAGCAGAAGAACCTCTTCCTCGTCATCTTCCAGCGTTTCATCATGATCTTGACCGAGC
AC
TTGGTACGATGTGAAACGGATGGGACCAGTATATTGACCCCGTGGTATAAGAACTGCATAGAGAGGCT
G
CAGCAGATCTTCCTACAGCATCACCAGACCATCCAGCAGTACATGGTGACCCTGGAGAACCTGCTCTTC
ACG
GCCGAGTTAGACCCTCACATCCTGGCTGTGTTCCAGCAATTCTGTGCTCTGCAGGCCTAA


Translation (790 aa):
MSRRRHSYENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILR
L
LCT
VARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVI
A
APSMVAMFENFVSVTQEEDVPQ
VRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFSTTESYLKRRQKTH
V
PMLQVWTADKPHPQEE
YLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDS
V
YPMPRVIFRMFDYTDDPE
GPVMPGSHSVERFVIEENLHCIIKSYWKERKTCAAQLVSYPGKNKIPLNYH
I
VE
VIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMSTTCVDRFINWFSHH
L
SNFQFRWSWED
WSDCLTQDLESPKPKFVREVLEKCMRLSYHQHILDIVPPTFSALCPANPTCIYKYGDE
S
S
NSLPGHSVALCLSVAFKSKATNDEIFSILKDVPNPNQVDDDDEGFRFNPLKIEVFVQTLLHLAAKSFS
H
SFSALA
KFHEVFKTLAESDKGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSR
D
FT
RLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGALEEQIERLQEKVE
A
AQSEQKNLFLVIFQ
RFIMILTEHLVRCETDGTSILTPWYKNCIERLQQIFLQHHQTIQQYMVTLENLLF
T
AELDPHILAVFQQFCALQA




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser