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Report for CCDS57257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57257.1 Public Mus musculus 3 Gimd1 23 108 98 CCDS HistoryNCBI Gene:433653Re-query CCDS DB by CCDS ID:57257.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163241.3 ENSMUSP00000126832.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163241.3Link to Ensembl Protein Viewer:ENSMUSP00000126832.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163241Re-query CCDS DB by Protein ID:ENSMUSP00000126832
Original member Current member EBI ENSMUST00000196701.1 ENSMUSP00000142630.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196701.1Link to Ensembl Protein Viewer:ENSMUSP00000142630.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196701Re-query CCDS DB by Protein ID:ENSMUSP00000142630
Original member Current member EBI ENSMUST00000212594.1 ENSMUSP00000148464.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212594.1Link to Ensembl Protein Viewer:ENSMUSP00000148464.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212594Re-query CCDS DB by Protein ID:ENSMUSP00000148464
Original member Current member EBI ENSMUST00000212804.1 ENSMUSP00000148832.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212804.1Link to Ensembl Protein Viewer:ENSMUSP00000148832.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212804Re-query CCDS DB by Protein ID:ENSMUSP00000148832
Original member NCBI NM_001270430.1 NP_001257359.1 Updated not alive Link to Nucleotide Sequence:NM_001270430.1Link to Protein Sequence:NP_001257359.1Re-query CCDS DB by Nucleotide ID:NM_001270430Re-query CCDS DB by Protein ID:NP_001257359
Current member NCBI NM_001270430.2 NP_001257359.1 Accepted alive Link to Nucleotide Sequence:NM_001270430.2Link to Protein Sequence:NP_001257359.1Re-query CCDS DB by Nucleotide ID:NM_001270430Re-query CCDS DB by Protein ID:NP_001257359Link to BLAST:NP_001257359.1
Current member NCBI NM_001372140.1 NP_001359069.1 Accepted alive Link to Nucleotide Sequence:NM_001372140.1Link to Protein Sequence:NP_001359069.1Re-query CCDS DB by Nucleotide ID:NM_001372140Re-query CCDS DB by Protein ID:NP_001359069Link to BLAST:NP_001359069.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257359.1 217 E9PW74 217 100% 0 0
NP_001359069.1 217 E9PW74 217 100% 0 0

Chromosomal Locations for CCDS 57257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 132634725 132635117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132644371 132644631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGACAGACACCAACAAGATGATCATCAACTTGGCTGTCTTTGGCAGGACTCAGAGTGGGAAAAGCTCTG
CTGGGAATGTTCTTTTGGGAAGTGCTGACTTCTACAGTAGCTTTGCTCCAGGCTCCGTAACCAAAGAGTG
CAGCCTGGGCCGCAGCTGTCACCTCCATGGCTTCATGCGTCGAGGGGGACAAGAGATCAGCCTTCAGATA
CAGGTACTGGACACTCCAGGGTATCCACACAGCAAGCTGAGCACGAGATGTGTAAAACAGGAAGTGAAGA
AGGCCTTGCTGCATCATTTTGGACAAGAGGGTCTCCATCTTGCTCTGCTGGTCCAGAGAGCTGATGTGCC
TTTCTTTGGACAGGAAGCATCTAACGCAGTCCAACTGATGCAGGAACTTCTGGGAGATTCCTGTAAGAAT
TACATGGCTGTCCTTTTTACCCATGCAGAAGAACTCGAAGAGGCAGGGTTGAGTGAAGAGGAATATTTGC
GTGAGGCTTCTGACACACTGTTAACCCTGCTCGATTCCGTTCAGCACAGATATATCTTCCTGTCCGGAAG
AGGAAACTTGTGCAATGAACAAAGAATCAAAATCTTAGAAAGAATCATGGAGTTTATAAAAGAAAATCAT
TTTCAAGTTCTTAGTTTGGCATAA

Translation (217 aa):
MTDTNKMIINLAVFGRTQSGKSSAGNVLLGSADFYSSFAPGSVTKECSLGRSCHLHGFMRRGGQEISLQI
QVLDTPGYPHSKLSTRCVKQEVKKALLHHFGQEGLHLALLVQRADVPFFGQEASNAVQLMQELLGDSCKN
YMAVLFTHAEELEEAGLSEEEYLREASDTLLTLLDSVQHRYIFLSGRGNLCNEQRIKILERIMEFIKENH
FQVLSLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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