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Report for CCDS24576.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24576.1 Public Mus musculus 11 Garin3 23 108 98 CCDS HistoryNCBI Gene:432552Re-query CCDS DB by CCDS ID:24576.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 24576.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063166.5 ENSMUSP00000055079.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063166.5Link to Ensembl Protein Viewer:ENSMUSP00000055079.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000063166Re-query CCDS DB by Protein ID:ENSMUSP00000055079
Original member Current member NCBI NM_001013783.2 NP_001013805.1 Accepted alive Link to Nucleotide Sequence:NM_001013783.2Link to Protein Sequence:NP_001013805.1Re-query CCDS DB by Nucleotide ID:NM_001013783Re-query CCDS DB by Protein ID:NP_001013805Link to BLAST:NP_001013805.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013805.1 665 Q5STT6 665 100% 0 0

Chromosomal Locations for CCDS 24576.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46404803 46405426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46406495 46407868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1998 nt):
ATGCCTGGGATGAAGAGAACCATGAGCAGTGAATGTTTGCTACCTTATTACACTGCCCACAGTTACCGAT
CCATGGGCGTGTTCAACACCTCCATGGGAAACCTACAACGACAGCTGTACAAGGGAGGAGAGTATGATAT
TTTCAAGTATGCACCAATGTTTGAGAGCGACTTTATCCAGATTAGCAAAAGAGGAGAGGTGATTGATGTT
CACAACCGCGTCCGAATGGTGACTGTGTGCATCGCATCTACCAGCCCGGTCCTTCCACTGCCCGATGTCA
TGTTGCTGGCCCGACCAGCTAAAGTCTGTGAAGAACATGCCAGACGAGCCCGATTCATCAAGGGGAAAGG
TTGCAAGCCTTCAAAGACTTTAGAGCTCACCAGGCTGCTTCCTTTGAAGTTTGTCAAGATCTCTGTTCAC
GATCACGAGAAACAGCAGCTGCGCCTGAAGCTTGCCACAGGCCGAACTTTTTACCTACAGCTGTGTCCCT
CTTCTGACGCACGAGAAGACCTCTTTTGTTATTGGGAAAAGCTTGTCTATCTCCTGAGGCCACCAATGAC
CAATTGCATCAGTAACTCAACGCTTCCCACTGGCGAGACAAGCGTTGACACCAAAAGCACACTTGTCTCA
GAGATCCGTGGAGAAGGGGATCAGAATTCTAGGCCTCAATCATCCCCAACTGTGTCAGAAGCCACTTCTG
CTGCATTTGCAGGAGGAGAGAGGACACAACCGGCTGCTGCAGCTGCTGTTACTCCAGTATCTGCCAAAGC
AAGGGCGGCAGGGACGGCAGGGGCAGCAGCAGGGACGGCAGGGGCAGCAGCAGGGACGGCAGGGCCAGCA
GCAGGGCCAGCAGCAGGGACGGCAGGGCCAGCAGCAGGGACGGCAGGGGCAGCAGCAGGGACGGCAGGGG
CAGCAGCAGGGACGGCAGGGGCAACAGCAGGGACGGCAGGAGCAACAGCAGGGATGGCAGGAGCAACAGC
AGGGACAGCAGCCGAGACAGCAGGGACAGCAGCCGAGACAGCAGGGGCAGCAAGGGCAGCAGGTGGCCCC
ATGGCTGCAGCAGTAGCAGCCCCCTCAGCAGGTATGACAAAAGCGGAGACAGCTACAAGTCCGACTTCAG
GTGTCATAAGCCTGGCAGCAACAACAACCAAGCCTCCAGGTTCAGGCCAGGTAGCCGCAGCCATGATAGG
ATCAGCTGCCAAAGATCAAGTAGGAGGTGAATCCAGCAAGGCCATGGCACTTGCTGCAAACATCACCTTA
GAAAATGTAGACGTGGCCTTGGCAGGAGCTGCCAATTCTATTTCGGAGTCCCCTCCTGCAGGGGGTGATG
CTAGTGGCTCCCCAGACACCGGCCTGAACGTGGCATTTGCAGGCAGCATCAAGACCAAGTCGCCTGCTGA
AGATAAACCTGAAGCTCCCCTCGTGTCAACCTTGCAGAGCGAAGGCTACATGTGTGAAAGGGATGGGAGC
CAGAAGGTTTCCCAAACTAGCTCTGAAGCAAAGGAAAAGAGAGAGCGACGAGAAAAGGACAGAACGAGTA
GCAGGAAAAGTTCCCACCACCGCAGGACAGGCATGAGTCGCCACAGTTCCAAGGACAAGAGCCGGAAAAC
ATCTTCCTACCGGTCTGTATCTGGGAAAACGAGAGAGGACAAAGGGAAAGGGCATGGCAGATTAAGGGGC
AAGAGACACAGCTCCTCTCACAAAAGTGAGTCCAGGACTGGTCACAAAACCAGGAAGAACCGATCACCAG
CTGGCTTGGGGTCTGTGAGTAAGAGAGCTACTAAGATTACATCATTTTTCAGGAGTTTCCTAGTAAGGCC
TACTCCAAAAGCAGGGGACACCTCATGTGATAGAGGAGGGGTAGACATTGTGACAAAGTTGGTAGAGAAG
AAGCAGGACATAGAGGCCGTGATGGAGAAAAGCAAGGATTCAGAGTTCAAAGATACCGTAATCTCTGAGA
CAATGGAGAAGATCATCCTTGAAACCAAATCCATTTAA

Translation (665 aa):
MPGMKRTMSSECLLPYYTAHSYRSMGVFNTSMGNLQRQLYKGGEYDIFKYAPMFESDFIQISKRGEVIDV
HNRVRMVTVCIASTSPVLPLPDVMLLARPAKVCEEHARRARFIKGKGCKPSKTLELTRLLPLKFVKISVH
DHEKQQLRLKLATGRTFYLQLCPSSDAREDLFCYWEKLVYLLRPPMTNCISNSTLPTGETSVDTKSTLVS
EIRGEGDQNSRPQSSPTVSEATSAAFAGGERTQPAAAAAVTPVSAKARAAGTAGAAAGTAGAAAGTAGPA
AGPAAGTAGPAAGTAGAAAGTAGAAAGTAGATAGTAGATAGMAGATAGTAAETAGTAAETAGAARAAGGP
MAAAVAAPSAGMTKAETATSPTSGVISLAATTTKPPGSGQVAAAMIGSAAKDQVGGESSKAMALAANITL
ENVDVALAGAANSISESPPAGGDASGSPDTGLNVAFAGSIKTKSPAEDKPEAPLVSTLQSEGYMCERDGS
QKVSQTSSEAKEKRERREKDRTSSRKSSHHRRTGMSRHSSKDKSRKTSSYRSVSGKTREDKGKGHGRLRG
KRHSSSHKSESRTGHKTRKNRSPAGLGSVSKRATKITSFFRSFLVRPTPKAGDTSCDRGGVDIVTKLVEK
KQDIEAVMEKSKDSEFKDTVISETMEKIILETKSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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