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Report for CCDS62422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62422.1 Public Homo sapiens 18 TPGS2 24 110 108 CCDS HistoryNCBI Gene:25941Re-query CCDS DB by CCDS ID:62422.1Re-query CCDS DB by GeneID:25941See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 62422.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000593035.5 ENSP00000467392.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000593035.5Link to Ensembl Protein Viewer:ENSP00000467392.1Re-query CCDS DB by Nucleotide ID:ENST00000593035Re-query CCDS DB by Protein ID:ENSP00000467392
Original member Current member NCBI NM_001271949.2 NP_001258878.1 Accepted alive Link to Nucleotide Sequence:NM_001271949.2Link to Protein Sequence:NP_001258878.1Re-query CCDS DB by Nucleotide ID:NM_001271949Re-query CCDS DB by Protein ID:NP_001258878Link to BLAST:NP_001258878.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258878.1 265 Q68CL5-4 265 100% 0 0

Chromosomal Locations for CCDS 62422.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36796805 36797050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36798449 36798609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36800198 36800311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36805374 36805397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36807847 36807934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36818894 36818973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36828683 36828767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGGAGGAGGAGGCATCGTCCCCGGGGCTGGGCTGCAGCAAGCCGCACCTGGAGAAGCTGACCCTGGGCA
TCACGCGCATCCTAGAATCTTCCCCAGGTGTGACTGAGGTGACCATCATAGAAAAGCCTCCTGCTGAACG
TCATATGATTTCTTCCTGGGAACAAAAGAATAACTGTGTGATGCCTGAAGATGTGAAGAACTTTTACCTG
ATGACCAATGGCTTCCACATGACATGGAGTGTGAAGCTGGATGACCTGGAGGACGATACACATGAAGCCA
GTGATGATCAGCCAGAGAAGCCTCACTTTGACTCTCGCAGTGTGATATTTGAGCTGGATTCATGCAATGG
CAGTGGGAAAGTTTGCCTTGTCTACAAAAGTGGGAAACCAGCATTAGCAGAAGACACTGAGATCTGGTTC
CTGGACAGAGCGTTATACTGGCATTTTCTCACAGACACCTTTACTGCCTATTACCGCCTGCTCATCACCC
ACCTGGGCCTGCCCCAGTGGCAATATGCCTTCACCAGCTATGGCATTAGCCCACAGGCCAAGCAATGGTT
CAGCATGTATAAACCTATCACCTACAACACAAACCTGCTCACAGAAGAGACCGACTCCTTTGTGAATAAG
CTAGATCCCAGCAAAGTGTTTAAGAGCAAGAACAAGATCGTAATCCCAAAAAAGAAAGGGCCTGTGCAGC
CTGCAGGTGGCCAGAAAGGGCCCTCAGGACCCTCCGGTCCCTCCACTTCCTCCACTTCTAAATCCTCCTC
TGGCTCTGGAAACCCCACCCGGAAGTGA

Translation (265 aa):
MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCVMPEDVKNFYL
MTNGFHMTWSVKLDDLEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWF
LDRALYWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETDSFVNK
LDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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