NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40455.1 Public Mus musculus 8 B3gnt9 23 108 98 CCDS HistoryNCBI Gene:97440Re-query CCDS DB by CCDS ID:40455.1Re-query CCDS DB by GeneID:97440See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40455.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000136822.2 ENSMUSP00000130840.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000136822.2Link to Ensembl Protein Viewer:ENSMUSP00000130840.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000136822Re-query CCDS DB by Protein ID:ENSMUSP00000130840
Original member Current member EBI ENSMUST00000093217.8 ENSMUSP00000133023.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093217.8Link to Ensembl Protein Viewer:ENSMUSP00000133023.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000093217Re-query CCDS DB by Protein ID:ENSMUSP00000133023
Original member Current member NCBI NM_001271915.1 NP_001258844.1 Accepted alive Link to Nucleotide Sequence:NM_001271915.1Link to Protein Sequence:NP_001258844.1Re-query CCDS DB by Nucleotide ID:NM_001271915Re-query CCDS DB by Protein ID:NP_001258844Link to BLAST:NP_001258844.1
Original member Current member NCBI NM_178879.4 NP_849210.1 Accepted alive Link to Nucleotide Sequence:NM_178879.4Link to Protein Sequence:NP_849210.1Re-query CCDS DB by Nucleotide ID:NM_178879Re-query CCDS DB by Protein ID:NP_849210Link to BLAST:NP_849210.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258844.1 399 Q8VI16 399 100% 0 0
NP_849210.1 399 Q8VI16 399 100% 0 0

Chromosomal Locations for CCDS 40455.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105253555 105254754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGAGGAGGAGGAGGAGGCCGCGCCTTTGCCCAGACGCGTGGCTTACGCTGCTGCTCAGCGCCGCCCTCG
GACTCCTGCTCTACGCGCAGCGCGACGTGGCATCCCCCACGACCAGACCACCAGCGCGAGGACCCCAGCT
CCCGCGGCCCACTCCTAGCCTCCGAGCACGCGAGCTCCCTAACACCGCCCGCGCGGCCCCGCTGGCCTAC
GAGGGGGACACTCCGGTGCCGCCCACACCTACGGACCCCTTTGACTTCGGCGGGTATCTGCGCGCCAAGG
ACCAACGGCGCTTCCCGCTGCTCATTAACCAGCGTCGCAAATGCCGCAGCGACGGCGCATCCGGCGGTTC
GCCGGACCTGCTCATCGCTGTCAAGTCTGTGGCTGCGGACTTTGAGCGGCGGGAAGCCGTTCGCCAGACT
TGGGGAGCCGAGGGTCGCGTGCAGGGGGCACTCGTGCGCCGAGTGTTCTTGTTGGGCGTGCCCAAGGGGG
CGGGCTCTGGCGGGGCAGGCACCCGTTCGCACTGGCGCACCCTGCTGGAGGCGGAGAGCCGAGCTTATGC
AGACATTCTGCTCTGGGCTTTCGAAGACACCTTTTTCAATCTAACGCTGAAGGAGATTCACTTTCTATCT
TGGGCCTCAGCATTCTGTCCAGATGTACACTTTGTTTTTAAGGGCGATGCAGATGTGTTCGTGCACGTGA
GGAACCTGCTGCAGTTTCTGGAGCTCCGGGATCCCGCACAGGACCTTCTTGCGGGTGATGTGATTGTGCA
GGCAAGGCCAATCCGAGCTAGAGCCAGCAAGTACTTCATTCCCCGGGCTGTGTATGGACTGCCCGTTTAC
CCTGCCTACGCAGGTGGCGGCGGCTTTGTTCTTTCGGGAGCCACGCTCCGCCGCCTAGCTGATGCTTGCT
CACAAGTTGAGCTCTTTCCCATAGACGATGTCTTTCTAGGCATGTGTTTGCAGCGCTTGCGGCTCACACC
AGAGCCTCATCCAGCGTTTCGCACCTTTGGCATCTCCCAGCCTTCAGCTGCACCTCATCTTCGAACCTTT
GACCCCTGTTTCTACCGAGAACTGGTGGTAGTACATGGGCTGTCTGCAGCTGACATCTGGCTTATGTGGC
GCTTGTTGCATGGGCCTCAGGGCCCAGTCTGTGCACATCCGCAGCCTGTGGCAACAGGTCCCTTCCAATG
GAATTCTTAG

Translation (399 aa):
MRRRRRPRLCPDAWLTLLLSAALGLLLYAQRDVASPTTRPPARGPQLPRPTPSLRARELPNTARAAPLAY
EGDTPVPPTPTDPFDFGGYLRAKDQRRFPLLINQRRKCRSDGASGGSPDLLIAVKSVAADFERREAVRQT
WGAEGRVQGALVRRVFLLGVPKGAGSGGAGTRSHWRTLLEAESRAYADILLWAFEDTFFNLTLKEIHFLS
WASAFCPDVHFVFKGDADVFVHVRNLLQFLELRDPAQDLLAGDVIVQARPIRARASKYFIPRAVYGLPVY
PAYAGGGGFVLSGATLRRLADACSQVELFPIDDVFLGMCLQRLRLTPEPHPAFRTFGISQPSAAPHLRTF
DPCFYRELVVVHGLSAADIWLMWRLLHGPQGPVCAHPQPVATGPFQWNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH