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Report for CCDS28722.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28722.1 Public Mus musculus 17 H2-M10.3 23 108 98 CCDS HistoryNCBI Gene:110696Re-query CCDS DB by CCDS ID:28722.1Re-query CCDS DB by GeneID:110696See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28722.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073546.4 ENSMUSP00000073236.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073546.4Link to Ensembl Protein Viewer:ENSMUSP00000073236.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000073546Re-query CCDS DB by Protein ID:ENSMUSP00000073236
Original member Current member NCBI NM_201608.2 NP_963902.1 Accepted alive Link to Nucleotide Sequence:NM_201608.2Link to Protein Sequence:NP_963902.1Re-query CCDS DB by Nucleotide ID:NM_201608Re-query CCDS DB by Protein ID:NP_963902Link to BLAST:NP_963902.1

Chromosomal Locations for CCDS 28722.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36366266 36366366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36366493 36366768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36367316 36367591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36367835 36368104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36368342 36368411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGAGGAACCCTGGATGCTGCACACTCCTCCTCCTCTTGGTGGCCATGGACCTGAACCAGTATTGTGCAG
GCTCACACTGGCTGCAGACTTTCAACATTGCATTTTTGGAGCCTGGCATGATTAATTCCCGGTTCATCCA
CATTGGCTATGTAGACTCTATACAGTATCAAGGATTTGACAGCAAAGAACCAATGGCTATTTTGAAACCT
CGGGCTGCATGGATGGAGCAGGAACTACCTAAGTATTGGAACGTGGAGACAACAAAAATTCTGCTATTGT
CACAGATAGAAAGACGAATTCTTTACTTCATGATAGAAAAATATGAACATAGAATGAACGATTATCACAC
CCTGCAGGAAGTATATGGCTGCAATGTGGCTACTGATGGGCGCTTCCTTCACGGTCACTTCCGGCTCACC
TACTATGGCTACGATTACTTAACCCTGAATGAGGACCTGAGCTCCTGGACTGCAGAGGGCAAGGGAGCTG
AATACATGAAGAACAGGTGGGAGAATATGAGTGAGGCAGAAAGGTGGAAGACTTACCTTCGAGGGGAGTG
TGTACAAAGGCTTCTTAGATACCTCGACCTTGGAAAGGAGACCTTGCTGCGCTCTGATGCCCCCCGAACA
CATGTGACCCACCATGTAAGACCTGAAGGGAATGTCACCCTGAGGTGCTGGGCCCTAGGCTTCTACCCAG
CTGACATCACCCTGACCTGGAAGAGGGATGGGAACAACCTCACCCAGGACATGGAGCTGCCAGATACCAG
GCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTTCCTTCTGGAGAAGAGCTGAGATAC
ACATGTCATGTGCACCATGAAGGGTTACCTGAGCCTCTCACTCTGAAATGGGAACCTCCACAAACCATCC
CCATCATAGCAATCCTCATCGGCCTGGTTCTTGGAACTTTGGTGGTGGGAACTGTGGTCATTTTTCTGGT
GTGGAAGAAATAA

Translation (330 aa):
MRNPGCCTLLLLLVAMDLNQYCAGSHWLQTFNIAFLEPGMINSRFIHIGYVDSIQYQGFDSKEPMAILKP
RAAWMEQELPKYWNVETTKILLLSQIERRILYFMIEKYEHRMNDYHTLQEVYGCNVATDGRFLHGHFRLT
YYGYDYLTLNEDLSSWTAEGKGAEYMKNRWENMSEAERWKTYLRGECVQRLLRYLDLGKETLLRSDAPRT
HVTHHVRPEGNVTLRCWALGFYPADITLTWKRDGNNLTQDMELPDTRPAGDGTFQKWAAVVVPSGEELRY
TCHVHHEGLPEPLTLKWEPPQTIPIIAILIGLVLGTLVVGTVVIFLVWKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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