NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17960.1 Public Mus musculus 4 Gdf6 23 108 98 CCDS HistoryNCBI Gene:242316Re-query CCDS DB by CCDS ID:17960.1Re-query CCDS DB by GeneID:242316See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17960.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057613.2 ENSMUSP00000062884.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057613.2Link to Ensembl Protein Viewer:ENSMUSP00000062884.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000057613Re-query CCDS DB by Protein ID:ENSMUSP00000062884
Original member Current member NCBI NM_013526.1 NP_038554.1 Accepted alive Link to Nucleotide Sequence:NM_013526.1Link to Protein Sequence:NP_038554.1Re-query CCDS DB by Nucleotide ID:NM_013526Re-query CCDS DB by Protein ID:NP_038554Link to BLAST:NP_038554.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038554.1 454 P43028 454 100% 0 0

Chromosomal Locations for CCDS 17960.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 9844478 9844892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9859335 9860284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGGACACTCCTAGGGTCCTTCTCTGGGCGATCTTCCTCATTAGCTTCCTCTGGGATTTGCCGGGTTTCC
AGCAGGCTTCCATCTCCTCGTCCTCCTCCTCCTCCACCGAATTGGACTCCACCAAAGACGTGGGGAACCG
CAAAGAAGGGAAGATGCAGCGAACTCCACAAGAGAGTGCCGAGGGCCGGACGCCCCCGGAGCACGGGCTG
CGGCAGAAGGACCTCCGGCGGCGGCCGCCCGGACAACATCAGGGGCAGGAGCCGCCGGGCAGGGGGCTGC
GCGTGGTGCCTCACGAGTACATGCTGTCAATCTACAAGACTTACTCCATTGCCGAGAAGCTGGGCATCAA
TGCCAGCTTTTTCCAGTCTTCCAAGTCAGCTAATACGATCACTAGCTTTGTAGACAGAGGACTGGACGAT
CTCTCGCACACTCCTCTCCGGAGACAGAAGTATTTGTTTGATGTGTCCACACTCTCAGACAAAGAAGAGC
TGGTGGGCGCAGAGCTAAGGCTTTATCGCCAGGCGCCCCCAACGCCCTGGGGGCTACCGGCCCGACCGCT
GCACTTGCAGCTCTTCCCTTGTTTATCCCCATTGCTACTGGACGCCAGGACCCTGGATCCTCAGGGACCA
ACCCAGGCCGGCTGGGAAGTCTTCGACGTGTGGCAGGGCCTGCGCCCTCAGCCTTGGAAGCAGCTGTGCC
TGGAGTTGCGGGCAGCCTGGGGTGAGCTGGACGCCGGGGATACGGGGGCGCGCGCGAGGGGTCCCCAGCA
GCCACCGCCTCTGGACCTGCGGAGTCTGGGCTTCGGTCGGAGGGTGAGGCCGCCCCAGGAGCGCGCCCTG
CTTGTAGTGTTCACCAGATCGCAGCGCAAGAACCTGTTCACTGAGATGCATGAGCAGCTGGGCTCTGCAG
AGGCTGCGGGAGCCGAGGGGTCATGGCCAGCGCCGTCGGGCTCCCCAGACGCCGGGTCTTGGCTGCCCTC
GCCCGGCCGCCGGCGGCGACGCACCGCCTTCGCCAGCCGTCACGGCAAGCGACATGGCAAGAAGTCCAGG
CTGCGCTGCAGCAGAAAGCCTCTGCACGTGAATTTTAAGGAGTTAGGCTGGGACGACTGGATTATCGCGC
CCCTAGAGTACGAGGCCTATCACTGCGAGGGCGTGTGCGACTTTCCGCTGCGCTCGCACCTTGAGCCCAC
TAACCATGCCATCATTCAGACGCTGATGAACTCCATGGACCCGGGCTCCACCCCGCCTAGCTGCTGCGTT
CCCACCAAACTGACTCCCATTAGCATCCTGTACATCGACGCGGGCAATAATGTAGTCTACAAGCAGTATG
AGGACATGGTGGTGGAGTCCTGCGGCTGTAGGTAG

Translation (454 aa):
MDTPRVLLWAIFLISFLWDLPGFQQASISSSSSSSTELDSTKDVGNRKEGKMQRTPQESAEGRTPPEHGL
RQKDLRRRPPGQHQGQEPPGRGLRVVPHEYMLSIYKTYSIAEKLGINASFFQSSKSANTITSFVDRGLDD
LSHTPLRRQKYLFDVSTLSDKEELVGAELRLYRQAPPTPWGLPARPLHLQLFPCLSPLLLDARTLDPQGP
TQAGWEVFDVWQGLRPQPWKQLCLELRAAWGELDAGDTGARARGPQQPPPLDLRSLGFGRRVRPPQERAL
LVVFTRSQRKNLFTEMHEQLGSAEAAGAEGSWPAPSGSPDAGSWLPSPGRRRRRTAFASRHGKRHGKKSR
LRCSRKPLHVNFKELGWDDWIIAPLEYEAYHCEGVCDFPLRSHLEPTNHAIIQTLMNSMDPGSTPPSCCV
PTKLTPISILYIDAGNNVVYKQYEDMVVESCGCR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH