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Report for CCDS46226.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46226.1 Public Homo sapiens 2 MATN3 24 110 108 CCDS HistoryNCBI Gene:4148Re-query CCDS DB by CCDS ID:46226.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46226.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407540.8 ENSP00000383894.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000407540.8Link to Ensembl Protein Viewer:ENSP00000383894.3Re-query CCDS DB by Nucleotide ID:ENST00000407540Re-query CCDS DB by Protein ID:ENSP00000383894
Original member Current member NCBI NM_002381.5 NP_002372.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002381.5Link to Protein Sequence:NP_002372.1Re-query CCDS DB by Nucleotide ID:NM_002381Re-query CCDS DB by Protein ID:NP_002372Link to BLAST:NP_002372.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002372.1 486 O15232-1 486 100% 0 0

Chromosomal Locations for CCDS 46226.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 19993111 19993166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19994299 19994409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 19997134 19997259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20000441 20000566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20001955 20002080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20003161 20003286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20005744 20006310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20012409 20012631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGCCGCGCCCGGCCCCCGCGCGCCGCCTCCCGGGACTCCTCCTGCTGCTCTGGCCGCTGCTGCTGCTGC
CCTCCGCCGCCCCCGACCCCGTGGCCCGCCCGGGCTTCCGGAGGCTGGAGACCCGAGGTCCCGGGGGCAG
CCCTGGACGCCGCCCCTCTCCTGCGGCTCCCGACGGCGCGCCCGCTTCCGGGACCAGCGAGCCTGGCCGC
GCCCGCGGTGCAGGTGTTTGCAAGAGCAGACCCTTGGACCTGGTGTTTATCATTGATAGTTCTCGTAGCG
TACGGCCCCTGGAATTCACCAAAGTGAAAACTTTTGTCTCCCGGATAATCGACACTCTGGACATTGGGCC
AGCCGACACGCGGGTGGCAGTGGTGAACTATGCTAGCACTGTGAAGATCGAGTTCCAACTCCAGGCCTAC
ACAGATAAGCAGTCCCTGAAGCAGGCCGTGGGTCGAATCACACCCTTGTCAACAGGCACCATGTCAGGCC
TAGCCATCCAGACAGCAATGGACGAAGCCTTCACAGTGGAGGCAGGGGCTCGAGAGCCCTCTTCTAACAT
CCCTAAGGTGGCCATCATTGTTACAGATGGGAGGCCCCAGGACCAGGTGAATGAGGTGGCGGCTCGGGCC
CAAGCATCTGGTATTGAGCTCTATGCTGTGGGCGTGGACCGGGCAGACATGGCGTCCCTCAAGATGATGG
CCAGTGAGCCCCTAGAGGAGCATGTTTTCTACGTGGAGACCTATGGGGTCATTGAGAAACTTTCCTCTAG
ATTCCAGGAAACCTTCTGTGCGCTGGACCCCTGTGTGCTTGGAACACACCAGTGCCAGCACGTCTGCATC
AGTGATGGGGAAGGCAAGCACCACTGTGAGTGTAGCCAAGGATACACCTTGAATGCCGACAAGAAAACGT
GTTCAGCTCTTGATAGGTGTGCTCTTAACACCCACGGATGTGAGCACATCTGTGTGAATGACAGAAGTGG
CTCTTATCATTGTGAGTGCTATGAAGGTTATACCTTGAATGAAGACAGGAAAACTTGTTCAGCTCAAGAT
AAATGTGCTTTGGGTACCCATGGGTGTCAGCACATTTGTGTGAATGACAGAACAGGGTCCCATCATTGTG
AATGCTATGAGGGCTACACTCTGAATGCAGATAAAAAAACATGTTCAGTCCGTGACAAGTGTGCCCTAGG
CTCTCATGGTTGCCAGCACATTTGTGTGAGTGATGGGGCCGCATCCTACCACTGTGATTGCTATCCTGGC
TACACCTTAAATGAGGACAAGAAAACATGTTCAGCCACTGAGGAAGCACGAAGACTTGTTTCCACTGAAG
ATGCTTGTGGATGTGAAGCTACACTGGCATTCCAGGACAAGGTCAGCTCGTATCTTCAAAGACTGAACAC
TAAACTTGATGACATTTTGGAGAAGTTGAAAATAAATGAATATGGACAAATACATCGTTAA

Translation (486 aa):
MPRPAPARRLPGLLLLLWPLLLLPSAAPDPVARPGFRRLETRGPGGSPGRRPSPAAPDGAPASGTSEPGR
ARGAGVCKSRPLDLVFIIDSSRSVRPLEFTKVKTFVSRIIDTLDIGPADTRVAVVNYASTVKIEFQLQAY
TDKQSLKQAVGRITPLSTGTMSGLAIQTAMDEAFTVEAGAREPSSNIPKVAIIVTDGRPQDQVNEVAARA
QASGIELYAVGVDRADMASLKMMASEPLEEHVFYVETYGVIEKLSSRFQETFCALDPCVLGTHQCQHVCI
SDGEGKHHCECSQGYTLNADKKTCSALDRCALNTHGCEHICVNDRSGSYHCECYEGYTLNEDRKTCSAQD
KCALGTHGCQHICVNDRTGSHHCECYEGYTLNADKKTCSVRDKCALGSHGCQHICVSDGAASYHCDCYPG
YTLNEDKKTCSATEEARRLVSTEDACGCEATLAFQDKVSSYLQRLNTKLDDILEKLKINEYGQIHR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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