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Report for CCDS15106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15106.1 Public Mus musculus 1 Slc16a14 23 108 98 CCDS HistoryNCBI Gene:71781Re-query CCDS DB by CCDS ID:15106.1Re-query CCDS DB by GeneID:71781See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15106.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027422.6 ENSMUSP00000027422.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027422.6Link to Ensembl Protein Viewer:ENSMUSP00000027422.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027422Re-query CCDS DB by Protein ID:ENSMUSP00000027422
Original member NCBI NM_027921.1 NP_082197.1 Updated not alive Link to Nucleotide Sequence:NM_027921.1Link to Protein Sequence:NP_082197.1Re-query CCDS DB by Nucleotide ID:NM_027921Re-query CCDS DB by Protein ID:NP_082197
Current member NCBI NM_027921.2 NP_082197.1 Accepted alive Link to Nucleotide Sequence:NM_027921.2Link to Protein Sequence:NP_082197.1Re-query CCDS DB by Nucleotide ID:NM_027921Re-query CCDS DB by Protein ID:NP_082197Link to BLAST:NP_082197.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082197.1 512 Q8K1C7 512 100% 0 0

Chromosomal Locations for CCDS 15106.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 84907278 84907429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84912196 84913173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84922854 84922997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84929287 84929551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGTATACGAGTCATGAAGATATCGGGTATGACCTTGAAGACGACCGAAAGGCTAAGAATAAGAAGACGC
TGAAGCCCCACCCAGATATCGATGGCGGGTGGGCCTGGATGATGGTCCTCTCGTCCTTCTTTGTTCACAT
CCTCATCATGGGCTCACAGATGGCCCTAGGAGTCCTCAACGTGGAGTGGCTTGAAGAGTTTCACCAGAGC
CGCGGCCTGACCGCCTGGGTCAGCTCCCTGAGCATGGGCATCACCTTGATCGTGGGACCTTTCATCGGCT
TGTTCATTAACACCTGCGGGTGCCGCCAGACAGCAATCATTGGAGGCCTGGTGAACTCCCTCGGCTGGGT
GTTGAGCGCCTATGCAGCCAATGTGCAGTCTCTCTTTATTACCTTTGGAGTGGCAGCAGGCCTTGGCAGT
GGGATGGCTTACCTACCTGCAGTGGTCATGGTGGGAAGGTACTTTCAGAAGAGACGAGCCCTGGCCCAGG
GCCTCAGTACCACGGGGACAGGATTTGGGACGTTCCTGATGACCGTGTTGCTGAAATACCTGTGCGCAGA
ATATGGCTGGCGGAATGCTATGTTCATCCAAGGTGCTCTGTCCCTGAACCTGTGTGTCTGTGGGGCGCTC
ATGAGGCCCCTCTCTCCCGAGAAGTTAGAAAACTGCCCAGAAGCGGAAGAGCCGTGTGCTCTCCCAGCTT
ACTCCACTGAATCTGTTAAGTCTGGAGGACCACTGGGCATGGCTGAAGAACAGGACAGAAGGCCCGGGAA
TGAGGAGATGGTGTGTGACCTTCAAACACAGGAGTGTCAAGGTCAAACCCATCCGAGGAAGAATGTGTGT
GCCTTCCGGGTTCTGAAGACAGTGAGCCAGCTCACTGTGCAAGTCCGGAGGGGCTTTAGGGACTGGCACT
CAGGCTATTTTGGGACGGCTTCACTCTTCACCAACCGCATGTTTGTAGCCTTTATTTTCTGGGCTCTGTT
CGCATACAGCAGCTTTGTCATCCCTTTCATCCACCTGCCCGAAATCGTCAGTTTGTATAACTTGTCAGAG
CAAAATGACACATTCCCTCTGACCTCGATTATAGCAATACTTCACATCTTCGGGAAGGTGATCTTGGGGG
CCGTGGCCGACCTCCCCTGTATCAGCGTCTGGAATGTCTTCCTCATCGCTAACTTCACCCTCGTCCTCAG
CATCTTCCTTCTGCCTCTGATGCACACCTACGCGAGTCTGGCTGTCATTTGTGCCCTAATTGGGTTTTCT
AGCGGGTATTTCTCCCTCATGCCTGTGGTGACAGAGGACCTGGTTGGCACTGAGCACTTGGCCAATGCCT
ACGGCATCATCATCTGCGCCAATGGCATCTCAGCCTTACTAGGACCACCATTCGCAGGATGGATCTTTGA
CATCACCCAAAAATATGACTTTTCCTTTTATATATGTGGTTTGCTTTACATGGTAGGGATACTCTTTTTG
CTCATTCAACCGTGTATTCAGATGATAGATCAATCCAGAAGGAAGTGCATAGAGGGTGCACATGTTTAG

Translation (512 aa):
MYTSHEDIGYDLEDDRKAKNKKTLKPHPDIDGGWAWMMVLSSFFVHILIMGSQMALGVLNVEWLEEFHQS
RGLTAWVSSLSMGITLIVGPFIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAANVQSLFITFGVAAGLGS
GMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMFIQGALSLNLCVCGAL
MRPLSPEKLENCPEAEEPCALPAYSTESVKSGGPLGMAEEQDRRPGNEEMVCDLQTQECQGQTHPRKNVC
AFRVLKTVSQLTVQVRRGFRDWHSGYFGTASLFTNRMFVAFIFWALFAYSSFVIPFIHLPEIVSLYNLSE
QNDTFPLTSIIAILHIFGKVILGAVADLPCISVWNVFLIANFTLVLSIFLLPLMHTYASLAVICALIGFS
SGYFSLMPVVTEDLVGTEHLANAYGIIICANGISALLGPPFAGWIFDITQKYDFSFYICGLLYMVGILFL
LIQPCIQMIDQSRRKCIEGAHV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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