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Report for CCDS17188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17188.1 Public Mus musculus 2 Ythdf1 23 108 98 CCDS HistoryNCBI Gene:228994Re-query CCDS DB by CCDS ID:17188.1Re-query CCDS DB by GeneID:228994See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17188.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037299.14 ENSMUSP00000037808.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037299.14Link to Ensembl Protein Viewer:ENSMUSP00000037808.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037299Re-query CCDS DB by Protein ID:ENSMUSP00000037808
Original member Current member NCBI NM_173761.3 NP_776122.1 Accepted alive Link to Nucleotide Sequence:NM_173761.3Link to Protein Sequence:NP_776122.1Re-query CCDS DB by Nucleotide ID:NM_173761Re-query CCDS DB by Protein ID:NP_776122Link to BLAST:NP_776122.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776122.1 559 P59326 559 100% 0 0

Chromosomal Locations for CCDS 17188.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 180905642 180905668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180910687 180912207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180919135 180919214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180920312 180920336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180920684 180920710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGTCGGCCACCAGCGTGGACCCCCAGAGAACAAAAGGACAAGATAATAAAGTACAAAATGGTTCTTTGC
ATCAGAAGGATGCAGTTCATGACAATGACTTTGAGCCCTACCTTTCTGGACAGTCCAATCCGAGTAACAG
TTACCCCTCGATGAGTGATCCTTACCTGTCCAGTTACTATCCACCATCCATTGGATTTCCTTACTCCCTC
AGCGAGGCACCATGGTCCACTGCAGGGGACCCTCCCATCCCGTATCTCACTACCTATGGACAACTTAGTA
ATGGAGACCATCACTTCATGCATGATGCTGTTTTTGGGCAGCCTGGGGGTCTGGGGAACAACATTTACCA
GCACAGGTTTAATTTTTTCCCTGAAAACCCTGCATTCTCAGCATGGGGGACAAGTGGTTCTCAGGGGCAG
CAGACTCAGAGCTCAGCCTATGGGAGCAGTTACACTTACCCACCTAGCTCCCTTGGTGGCACAGTTGTTG
ATGGGCAGACAGGTTTTCACAGTGACTCCCTCAACAAGGCCCCTGGGATGAACAGTCTGGAGCAGGGCAT
GGTTGGCCTGAAGATTGGGGATGTTACCACCTCTGCAGTTAAGACGGTGGGTTCAGTTGTCAACAGTGTG
GCACTGACTGGTGTCCTTTCTGGCAATGGTGGGACAAATGTAAACATGCCAGTTTCAAAACCAACTTCAT
GGGCAGCCATTGCTAGCAAGCCTGCAAAACCACAGCCTAAGATGAAAACAAAGAGTGGGCCGATAGTTGG
GGGTGCACTGCCTCCTCCCCCTATCAAGCATAACATGGACATTGGTACTTGGGATAACAAGGGCCCTGCT
CCAAAGGCCTCCGCCCCCCAGCAGACACCATCCCCCCAGGCTGCCCCACAGCCCCAGCAGGTAGCTCAAC
CTCTCCCTGTTCAGCCCCCACCTTTGGTCCAGCCACAGTATCAGAGCCCTCAGCAGCCACTTCAACCCCG
CTGGGTGGCTCCTCGAAACAGAAATGCAGCATTTGGGCAGAGTGGAGGGGCCAACAGTGACAGTAACTCT
GTTGGAAATGCCCAACCTACTTCTGCCCCGAGTGTAGAATCCCACCCTGTCCTGGAGAAACTGAAAGCTG
CCCACAGCTATAACCCTAAAGAGTTCGACTGGAATCTTAAGAGTGGGCGGGTGTTCATCATCAAGAGCTA
TTCTGAGGACGACATCCACCGCTCCATCAAGTACTCCATCTGGTGTAGTACTGAACACGGCAACAAGCGC
CTGGACGGCGCCTTCCGCTCCATGAGCAGCAAGGGGCCTGTTTATCTCCTCTTCAGTGTCAATGGGAGTG
GACATTTCTGTGGGGTGGCAGAGATGAAGTCCCCTGTGGACTACGGCACCAGCGCTGGGGTCTGGTCTCA
GGACAAGTGGAAGGGAAAGTTTGATGTGAAGTGGATTTTTGTGAAGGATGTGCCCAACAACCAGCTGCGG
CACATCAGACTGGAGAATAACGACAACAAACCTGTCACAAACTCCCGTGATACACAGGAGGTGCCCTTAG
AAAAAGCAAAACAAGTGCTGAAGATTATCGCTTCCTATAAGCACACAACCTCTATCTTTGACGACTTTTC
TCATTATGAGAAGCGCCAGGAGGAAGAGGAGGTGGTGCGTAAGGAAAGACAGAATCGAAACAAACAATAA

Translation (559 aa):
MSATSVDPQRTKGQDNKVQNGSLHQKDAVHDNDFEPYLSGQSNPSNSYPSMSDPYLSSYYPPSIGFPYSL
SEAPWSTAGDPPIPYLTTYGQLSNGDHHFMHDAVFGQPGGLGNNIYQHRFNFFPENPAFSAWGTSGSQGQ
QTQSSAYGSSYTYPPSSLGGTVVDGQTGFHSDSLNKAPGMNSLEQGMVGLKIGDVTTSAVKTVGSVVNSV
ALTGVLSGNGGTNVNMPVSKPTSWAAIASKPAKPQPKMKTKSGPIVGGALPPPPIKHNMDIGTWDNKGPA
PKASAPQQTPSPQAAPQPQQVAQPLPVQPPPLVQPQYQSPQQPLQPRWVAPRNRNAAFGQSGGANSDSNS
VGNAQPTSAPSVESHPVLEKLKAAHSYNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKR
LDGAFRSMSSKGPVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLR
HIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEEVVRKERQNRNKQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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