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Report for CCDS24580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24580.1 Public Mus musculus 11 Timd6 23 108 98 CCDS HistoryNCBI Gene:407814Re-query CCDS DB by CCDS ID:24580.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24580.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050937.6 ENSMUSP00000050057.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050937.6Link to Ensembl Protein Viewer:ENSMUSP00000050057.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000050937Re-query CCDS DB by Protein ID:ENSMUSP00000050057
Original member Current member NCBI NM_001025435.3 NP_001020606.2 Accepted alive Link to Nucleotide Sequence:NM_001025435.3Link to Protein Sequence:NP_001020606.2Re-query CCDS DB by Nucleotide ID:NM_001025435Re-query CCDS DB by Protein ID:NP_001020606Link to BLAST:NP_001020606.2

Chromosomal Locations for CCDS 24580.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46574581 46574629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46577150 46577488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46584368 46584457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46586200 46586236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46587897 46587960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGGTGCTCCCTCAAGTCCTCCTTTCGACATTCCTACTCCTTCTCCCAGCTGCTTCAGGAGCGTTCCAGG
AAGTCCATGGAACAGGAGGTGACCCTGTGACGCTTCCATGCTCTTATCCTGAATCTCGTATACTCTCATT
TGTGTGCTGGGGCCGAGGCGAATGCGCTTCTGATACATGTGGACAAACATTGGTCTGGACTGATGGACAC
CGAGTCAACTATCGGACAAGCAACCGCTACCAGATAAACTCGCAGCTTCTTCAAGGAAATGCATCCTTGA
CAATCGAGTACGCCTATGAGAGCGACAGCGGTCTCTACTGCTGTCGAGTGGAAATGAAGGGATGGGATGG
CGTGCAGACACTGACCACCTCACTGCAGATTCAACCAGGAAGCAGTTCAGCCAGGACTAAAGGCCTTGCT
ATTGGACTCTCCATTTTCTTTCTGCTTCTGGTTCTTGTGGGCACATTAGTTATCACAAATTACATCCTTA
TGAAAAAGAGGCCAGAATCTCCAAGCTTGGTAGCATTATGTGTTTCTAAGATCAGAACTTTACTAAATAA
AGAGGTTGCTTCACCATGA

Translation (192 aa):
MVLPQVLLSTFLLLLPAASGAFQEVHGTGGDPVTLPCSYPESRILSFVCWGRGECASDTCGQTLVWTDGH
RVNYRTSNRYQINSQLLQGNASLTIEYAYESDSGLYCCRVEMKGWDGVQTLTTSLQIQPGSSSARTKGLA
IGLSIFFLLLVLVGTLVITNYILMKKRPESPSLVALCVSKIRTLLNKEVASP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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