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Report for CCDS16454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16454.1 Public Mus musculus 2 Cd82 23 108 98 CCDS HistoryNCBI Gene:12521Re-query CCDS DB by CCDS ID:16454.1Re-query CCDS DB by GeneID:12521See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16454.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028644.10 ENSMUSP00000028644.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028644.10Link to Ensembl Protein Viewer:ENSMUSP00000028644.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028644Re-query CCDS DB by Protein ID:ENSMUSP00000028644
Original member Current member EBI ENSMUST00000099696.7 ENSMUSP00000097287.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099696.7Link to Ensembl Protein Viewer:ENSMUSP00000097287.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099696Re-query CCDS DB by Protein ID:ENSMUSP00000097287
Original member Current member EBI ENSMUST00000111257.7 ENSMUSP00000106888.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111257.7Link to Ensembl Protein Viewer:ENSMUSP00000106888.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111257Re-query CCDS DB by Protein ID:ENSMUSP00000106888
Original member Current member EBI ENSMUST00000116457.8 ENSMUSP00000112158.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116457.8Link to Ensembl Protein Viewer:ENSMUSP00000112158.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116457Re-query CCDS DB by Protein ID:ENSMUSP00000112158
Original member Current member NCBI NM_001136055.2 NP_001129527.1 Accepted alive Link to Nucleotide Sequence:NM_001136055.2Link to Protein Sequence:NP_001129527.1Re-query CCDS DB by Nucleotide ID:NM_001136055Re-query CCDS DB by Protein ID:NP_001129527Link to BLAST:NP_001129527.1
Original member Current member NCBI NM_001271430.1 NP_001258359.1 Accepted alive Link to Nucleotide Sequence:NM_001271430.1Link to Protein Sequence:NP_001258359.1Re-query CCDS DB by Nucleotide ID:NM_001271430Re-query CCDS DB by Protein ID:NP_001258359Link to BLAST:NP_001258359.1
Original member Current member NCBI NM_001271431.1 NP_001258360.1 Accepted alive Link to Nucleotide Sequence:NM_001271431.1Link to Protein Sequence:NP_001258360.1Re-query CCDS DB by Nucleotide ID:NM_001271431Re-query CCDS DB by Protein ID:NP_001258360Link to BLAST:NP_001258360.1
Original member Current member NCBI NM_001271432.1 NP_001258361.1 Accepted alive Link to Nucleotide Sequence:NM_001271432.1Link to Protein Sequence:NP_001258361.1Re-query CCDS DB by Nucleotide ID:NM_001271432Re-query CCDS DB by Protein ID:NP_001258361Link to BLAST:NP_001258361.1
Original member Current member NCBI NM_001271461.1 NP_001258390.1 Accepted alive Link to Nucleotide Sequence:NM_001271461.1Link to Protein Sequence:NP_001258390.1Re-query CCDS DB by Nucleotide ID:NM_001271461Re-query CCDS DB by Protein ID:NP_001258390Link to BLAST:NP_001258390.1
Original member Current member NCBI NM_001271462.1 NP_001258391.1 Accepted alive Link to Nucleotide Sequence:NM_001271462.1Link to Protein Sequence:NP_001258391.1Re-query CCDS DB by Nucleotide ID:NM_001271462Re-query CCDS DB by Protein ID:NP_001258391Link to BLAST:NP_001258391.1
Original member Current member NCBI NM_007656.5 NP_031682.1 Accepted alive Link to Nucleotide Sequence:NM_007656.5Link to Protein Sequence:NP_031682.1Re-query CCDS DB by Nucleotide ID:NM_007656Re-query CCDS DB by Protein ID:NP_031682Link to BLAST:NP_031682.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129527.1 266 P40237 266 100% 0 0
NP_001258359.1 266 P40237 266 100% 0 0
NP_001258360.1 266 P40237 266 100% 0 0
NP_001258361.1 266 P40237 266 100% 0 0
NP_001258390.1 266 P40237 266 100% 0 0
NP_001258391.1 266 P40237 266 100% 0 0
NP_031682.1 266 P40237 266 100% 0 0

Chromosomal Locations for CCDS 16454.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 93419865 93419942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93420240 93420323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93420555 93420755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93421827 93421928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93429945 93430019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93430131 93430255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93433861 93433933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 93437388 93437450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGGGGGCAGGCTGTGTCAAAGTCACCAAGTATTTCCTCTTCCTCTTCAACTTGCTGTTCTTTATCCTGG
GTGCTGTGATCCTGGGCTTCGGGGTGTGGATTCTTGCAGACAAGAACAGCTTCATTTCCGTCCTACAAAC
CTCATCCAGCTCGCTGCAGGTGGGGGCTTACGTCTTCATCGGTGTGGGCGCCATCACCATAGTGATGGGC
TTCCTGGGCTGTATCGGTGCTGTCAATGAGGTCCGCTGCTTGCTGGGTCTGTACTTTGTCTTCCTTCTGC
TGATCCTCATCGCACAGGTGACCGTAGGGGTCCTCTTCTACTTCAACGCTGACAAGCTGAAGAAGGAGAT
GGGGAACACAGTGATGGACATCATTCGCAACTACACTGCCAATGCCACCAGTAGCCGCGAGGAGGCCTGG
GACTACGTGCAGGCGCAGGTCAAGTGCTGTGGCTGGGTCAGCCACTACAACTGGACAGAGAACGAGGAGC
TCATGGGCTTTACCAAGACCACTTACCCATGCTCCTGCGAGAAGATCAAGGAAGAGGACAACCAGCTCAT
TGTGAAGAAAGGATTCTGTGAGGCTGATAACAGCACTGTGAGCGAAAACAACCCTGAGGATTGGCCTGTG
AACACTGAGGGCTGCATGGAGAAGGCGCAGGCGTGGCTTCAGGAGAACTTCGGCATCCTTCTGGGCGTGT
GTGCTGGTGTTGCTGTCATTGAGCTGCTGGGGTTGTTCCTGTCCATATGTTTGTGCCGGTACATTCATTC
TGAAGACTACAGCAAGGTCCCCAAGTACTGA

Translation (266 aa):
MGAGCVKVTKYFLFLFNLLFFILGAVILGFGVWILADKNSFISVLQTSSSSLQVGAYVFIGVGAITIVMG
FLGCIGAVNEVRCLLGLYFVFLLLILIAQVTVGVLFYFNADKLKKEMGNTVMDIIRNYTANATSSREEAW
DYVQAQVKCCGWVSHYNWTENEELMGFTKTTYPCSCEKIKEEDNQLIVKKGFCEADNSTVSENNPEDWPV
NTEGCMEKAQAWLQENFGILLGVCAGVAVIELLGLFLSICLCRYIHSEDYSKVPKY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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