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Report for CCDS29567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29567.1 Public Mus musculus 19 Fth1 23 108 98 CCDS HistoryNCBI Gene:14319Re-query CCDS DB by CCDS ID:29567.1Re-query CCDS DB by GeneID:14319See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29567.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025563.7 ENSMUSP00000025563.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025563.7Link to Ensembl Protein Viewer:ENSMUSP00000025563.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025563Re-query CCDS DB by Protein ID:ENSMUSP00000025563
Original member Current member EBI ENSMUST00000235196.1 ENSMUSP00000158539.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235196.1Link to Ensembl Protein Viewer:ENSMUSP00000158539.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235196Re-query CCDS DB by Protein ID:ENSMUSP00000158539
Original member Current member NCBI NM_010239.2 NP_034369.1 Accepted alive Link to Nucleotide Sequence:NM_010239.2Link to Protein Sequence:NP_034369.1Re-query CCDS DB by Nucleotide ID:NM_010239Re-query CCDS DB by Protein ID:NP_034369Link to BLAST:NP_034369.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034369.1 182 P09528 182 100% 0 0

Chromosomal Locations for CCDS 29567.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 9982870 9982983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9984181 9984327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9984560 9984685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9984781 9984942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGACCACCGCGTCTCCCTCGCAAGTGCGCCAGAACTACCACCAGGACGCGGAGGCTGCCATCAACCGCC
AGATCAACCTGGAGTTGTATGCCTCCTACGTCTATCTGTCTATGTCTTGTTATTTTGACCGAGATGATGT
GGCTCTGAAGAACTTTGCCAAATACTTTCTCCACCAATCTCATGAGGAGAGGGAGCATGCCGAGAAACTG
ATGAAGCTGCAGAACCAGCGAGGTGGCCGAATCTTCCTGCAGGATATAAAGAAACCAGACCGTGATGACT
GGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGA
ACTGCACAAACTGGCTACTGACAAGAATGATCCCCACTTATGTGACTTCATTGAGACGTATTATCTGAGT
GAACAGGTGAAATCCATTAAAGAACTGGGTGACCACGTGACCAACTTACGCAAGATGGGTGCCCCTGAAG
CTGGCATGGCAGAATATCTCTTTGACAAGCACACCCTGGGACACGGTGATGAGAGCTAA

Translation (182 aa):
MTTASPSQVRQNYHQDAEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEKL
MKLQNQRGGRIFLQDIKKPDRDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETYYLS
EQVKSIKELGDHVTNLRKMGAPEAGMAEYLFDKHTLGHGDES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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