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Report for CCDS2982.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2982.1 Public Homo sapiens 3 LSAMP 24 110 108 CCDS HistoryNCBI Gene:4045Re-query CCDS DB by CCDS ID:2982.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2982.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000490035.7 ENSP00000419000.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000490035.7Link to Ensembl Protein Viewer:ENSP00000419000.1Re-query CCDS DB by Nucleotide ID:ENST00000490035Re-query CCDS DB by Protein ID:ENSP00000419000
Original member Current member NCBI NM_002338.5 NP_002329.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002338.5Link to Protein Sequence:NP_002329.2Re-query CCDS DB by Nucleotide ID:NM_002338Re-query CCDS DB by Protein ID:NP_002329Link to BLAST:NP_002329.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002329.2 338 Q13449 338 100% 0 0

Chromosomal Locations for CCDS 2982.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 115810317 115810414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 115841845 115841993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 115842458 115842578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 115852483 115852617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116019515 116019640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116086324 116086556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116444877 116445031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGTCAGGAGAGTTCAGCCGGATCGGAAACAGTTGCCACTGGTCCTACTGAGATTGCTCTGCCTTCTTC
CCACAGGACTGCCTGTTCGCAGCGTGGATTTTAACCGAGGCACGGACAACATCACCGTGAGGCAGGGGGA
CACAGCCATCCTCAGGTGCGTTGTAGAAGACAAGAACTCAAAGGTGGCCTGGTTGAACCGTTCTGGCATC
ATTTTTGCTGGACATGACAAGTGGTCTCTGGACCCACGGGTTGAGCTGGAGAAACGCCATTCTCTGGAAT
ACAGCCTCCGAATCCAGAAGGTGGATGTCTATGATGAGGGTTCCTACACTTGCTCAGTTCAGACACAGCA
TGAGCCCAAGACCTCCCAAGTTTACTTGATCGTACAAGTCCCACCAAAGATCTCCAATATCTCCTCGGAT
GTCACTGTGAATGAGGGCAGCAACGTGACTCTGGTCTGCATGGCCAATGGCCGTCCTGAACCTGTTATCA
CCTGGAGACACCTTACACCAACTGGAAGGGAATTTGAAGGAGAAGAAGAATATCTGGAGATCCTTGGCAT
CACCAGGGAGCAGTCAGGCAAATATGAGTGCAAAGCTGCCAACGAGGTCTCCTCGGCGGATGTCAAACAA
GTCAAGGTCACTGTGAACTATCCTCCCACTATCACAGAATCCAAGAGCAATGAAGCCACCACAGGACGAC
AAGCTTCACTCAAATGTGAGGCCTCGGCAGTGCCTGCACCTGACTTTGAGTGGTACCGGGATGACACTAG
GATAAATAGTGCCAATGGCCTTGAGATTAAGAGCACGGAGGGCCAGTCTTCCCTGACGGTGACCAACGTC
ACTGAGGAGCACTACGGCAACTACACCTGTGTGGCTGCCAACAAGCTGGGGGTCACCAATGCCAGCCTAG
TCCTTTTCAGACCTGGGTCGGTGAGAGGAATAAATGGATCCATCAGTCTGGCCGTACCACTGTGGCTGCT
GGCAGCATCTCTGCTCTGCCTTCTCAGCAAATGTTAA

Translation (338 aa):
MVRRVQPDRKQLPLVLLRLLCLLPTGLPVRSVDFNRGTDNITVRQGDTAILRCVVEDKNSKVAWLNRSGI
IFAGHDKWSLDPRVELEKRHSLEYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVPPKISNISSD
VTVNEGSNVTLVCMANGRPEPVITWRHLTPTGREFEGEEEYLEILGITREQSGKYECKAANEVSSADVKQ
VKVTVNYPPTITESKSNEATTGRQASLKCEASAVPAPDFEWYRDDTRINSANGLEIKSTEGQSSLTVTNV
TEEHYGNYTCVAANKLGVTNASLVLFRPGSVRGINGSISLAVPLWLLAASLLCLLSKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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