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Report for CCDS16346.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16346.1 Public Mus musculus 2 Or4p23 23 108 98 CCDS HistoryNCBI Gene:404330Re-query CCDS DB by CCDS ID:16346.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16346.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099814.1 ENSMUSP00000097402.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099814.1Link to Ensembl Protein Viewer:ENSMUSP00000097402.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099814Re-query CCDS DB by Protein ID:ENSMUSP00000097402
Original member Current member EBI ENSMUST00000215529.2 ENSMUSP00000149844.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215529.2Link to Ensembl Protein Viewer:ENSMUSP00000149844.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215529Re-query CCDS DB by Protein ID:ENSMUSP00000149844
Original member Current member EBI ENSMUST00000215179.2 ENSMUSP00000150548.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215179.2Link to Ensembl Protein Viewer:ENSMUSP00000150548.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215179Re-query CCDS DB by Protein ID:ENSMUSP00000150548
Original member Current member NCBI NM_207567.1 NP_997450.1 Accepted alive Link to Nucleotide Sequence:NM_207567.1Link to Protein Sequence:NP_997450.1Re-query CCDS DB by Nucleotide ID:NM_207567Re-query CCDS DB by Protein ID:NP_997450Link to BLAST:NP_997450.1

Chromosomal Locations for CCDS 16346.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88745960 88746886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGGATTTGGAAACCTCACAGAATTTATTTTTCTGGGACTTTTCCATAATGAGAATGTCAAAGAAATGT
GT
GCTGTGTTGTTCTTGCTTTGCTATCTTGCAATTCTCTGTGGCAACCTGGTTGTTCTTATTACTATTAG
G
GGCAGTCACCTTAGTGAGCAGCCAATGTATTATTTTCTCACTTACCTGTCTTTCATGGATGTCTGCTTC
ACA
TCCACAGTGGCCCCTAAATTGATAATAGACTTATTTGTACAATGTAACACAATCTCCTACAATGGCT
GC
ATAGCCCAGATGTTTTATGCACACTTTTTTGGTGCCACTGAGATATTCATCTTGGTTGCCATGGCCTA
T
GATCGGTACGTAGCCATTTGCAGACCCCTTTACTACATGATCACCATGAGCAGACAGGTATGTTACATG
CTT
GTGATAGCCTCAGCTATTGGTGCTTTTATACACTCACTTGTACATGTATTTATTATTATCAGACTTC
CC
TTTTGTGGCACCAATGAAATAGACCACTACTTCTGTGACATATTCCCCCTGCTGAAACTGGCCTGCAC
A
GATACAAGGCTCATGGTTATTGTAATCATTACCACTACAGGAGTTCTGTCCATTTTGACCTTTCTTGCC
TTG
GTCATTTCTTATATAATCATTTTGTCCATCCTGAGGACCAGGTCATCAGAGGGCCGCCGCAAAGCTC
TT
TCTACCTGTGGCTCACATATCACCGTTGTATTCATGTTCTTCTTGCCACTCATCTTTACCTATGTCCC
A
GTGGGTGATTCTGTTGGGGACGACAAGGTGTTTGCTCTGTTTTACACCATGATTGCCCCATTGTTCAAC
CCT
CTCATCTACACACTGAGGAATACAGACATGAAGAATGCCATGAGGAAGGTGTGGTGCCAAGACAAAC
TG
TTTGAAGGGAAGTGA


Translation (308 aa):
MGFGNLTEFIFLGLFHNENVKEMCAVLFLLCYLAILCGNLVVLITIRGSHLSEQPMYYFLTYLSFMDVCF
T
STVAPKLIIDLFVQCNTISYNGCIAQMFYAHFFGATEIFILVAMAYDRYVAICRPLYYMITMSRQVCYM
L
VIASAIGAFIHSLVHVFIIIRLPFCGTNEIDHYFCDIFPLLKLACTDTRLMVIVIITTTGVLSILTFLA
L
VISYIIILSILRTRSSEGRRKALSTCGSHITVVFMFFLPLIFTYVPVGDSVGDDKVFALFYTMIAPLFN
P
LIYTLRNTDMKNAMRKVWCQDKLFEGK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser