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Report for CCDS57670.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57670.1 Public Mus musculus 9 Or8c10 23 108 98 CCDS HistoryNCBI Gene:404312Re-query CCDS DB by CCDS ID:57670.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57670.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052085.1 ENSMUSP00000051631.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052085.1Link to Ensembl Protein Viewer:ENSMUSP00000051631.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000052085Re-query CCDS DB by Protein ID:ENSMUSP00000051631
Original member Current member NCBI NM_207552.2 NP_997435.2 Accepted alive Link to Nucleotide Sequence:NM_207552.2Link to Protein Sequence:NP_997435.2Re-query CCDS DB by Nucleotide ID:NM_207552Re-query CCDS DB by Protein ID:NP_997435Link to BLAST:NP_997435.2

Chromosomal Locations for CCDS 57670.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 38367548 38368543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGCTTCTACAGATGCAACACATGAAACAAATGATTATGGAAAATGACTCTTCAGTGTCAGAGTTCATAC
TTATGGGACTGACATACCAGCCTGAGCTCTGGTGGCCCTTATTTGTTCTGTTCTTGGTGAACTATACAGC
CACTGTGATGGGAAACCTGAGCTTAATGACTCTCATCTGTCTGAATTCTCATCTGCACACACCAATGTAC
TTTTTTATTCTCAACTTGTCCTTCATTGACTTCTGTTATTCATTTGTTTTTACCCCAAAAATGCTGATGG
GATTTGTCTCAGAACACAACACCATCTCCTTCACAGGATGCATGACTCAGCTATTTTTTTTCTGTCTTTT
TGTTAACTCTGAGTGCTATGTGCTGACAGCCATGGCCTATGATAGATATGTGGCCATCTGTAGGCCTCTG
CTGTACACAGTAGTTATGTCTCCCAGGGCTTGTTCCCTGTTAATGCTTGCTGCACACTTGATGGGTGTCT
CTTCTGCTGTTGTACACACAGGATGTATAATTCAGCTCAGGTTTTGTGGTTCAAAAGTAATCAACCACTA
CATGTGTGATACTTTCCCCCTCCTTGAGCTCTCCTGTGGTAGCAGTCATGTCAACGAGCTTGTAAGTTCT
GTTTCTGTGGCTGTCGTTGTTGTTATATCTAGCCTAATTATTGTATCCTCATATGCTTTGATTCTTGTCA
ATGTTATCCATTTGTCATCATCTAAGGGTTGGTCCAAAGCTGTGAGCACATGTAGCTCTCATATAATAAC
TGTTGCCCTGTTCTATGGATTTGGTTTGCTTGCTCATATCAAGCCATCATCTGCAGAATCTGTAGTTCAG
AGGAAATTTTTTTCAGTAGTTTATACTTTTGTGCTGCCTTTGTTGAATCCGCTCATTTACAGCCTCAGGA
ACAAGGATGTCAAACTTGCTTTGAAGAGAACACTAAAGACAGTTACAATCCAAGGGAAGTGCTTATGTTG
TAGCCATAAATCTTGA

Translation (331 aa):
MLLQMQHMKQMIMENDSSVSEFILMGLTYQPELWWPLFVLFLVNYTATVMGNLSLMTLICLNSHLHTPMY
FFILNLSFIDFCYSFVFTPKMLMGFVSEHNTISFTGCMTQLFFFCLFVNSECYVLTAMAYDRYVAICRPL
LYTVVMSPRACSLLMLAAHLMGVSSAVVHTGCIIQLRFCGSKVINHYMCDTFPLLELSCGSSHVNELVSS
VSVAVVVVISSLIIVSSYALILVNVIHLSSSKGWSKAVSTCSSHIITVALFYGFGLLAHIKPSSAESVVQ
RKFFSVVYTFVLPLLNPLIYSLRNKDVKLALKRTLKTVTIQGKCLCCSHKS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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