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Report for CCDS47733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47733.1 Public Homo sapiens 7 CASP2 24 110 108 CCDS HistoryNCBI Gene:835Re-query CCDS DB by CCDS ID:47733.1Re-query CCDS DB by GeneID:835See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 47733.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000350623.7 ENSP00000340030.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000350623.7Link to Ensembl Protein Viewer:ENSP00000340030.3Re-query CCDS DB by Nucleotide ID:ENST00000350623Re-query CCDS DB by Protein ID:ENSP00000340030
Original member Current member EBI ENST00000619992.4 ENSP00000481929.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619992.4Link to Ensembl Protein Viewer:ENSP00000481929.1Re-query CCDS DB by Nucleotide ID:ENST00000619992Re-query CCDS DB by Protein ID:ENSP00000481929
Original member Current member NCBI NM_032983.4 NP_116765.2 Accepted alive Link to Nucleotide Sequence:NM_032983.4Link to Protein Sequence:NP_116765.2Re-query CCDS DB by Nucleotide ID:NM_032983Re-query CCDS DB by Protein ID:NP_116765Link to BLAST:NP_116765.2

Chromosomal Locations for CCDS 47733.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 143288456 143288529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143291540 143291690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143292300 143292381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143294280 143294299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGGCGGCGCCGAGCGCGGGGTCTTGGTCCACCTTCCAGCACAAGGAGCTGATGGCCGCTGACAGGGGAC
GCAGGATATTGGGAGTGTGTGGCATGCATCCTCATCATCAGGAAACTCTAAAAAAGAACCGAGTGGTGCT
AGCCAAACAGCTGTTGTTGAGCGAATTGTTAGAACATCTTCTGGAGAAGGACATCATCACCTTGGAAATG
AGGGAGCTCATCCAGGCCAAAGTGGGCAGTTTCAGCCAGAATGTGGAACTCCTCAACTTGCTGCCTAAGA
GGGGTCCCCAAGCTTTTGATGCCTTCTGTGAAGCCTTGCACTCCTGA

Translation (108 aa):
MAAPSAGSWSTFQHKELMAADRGRRILGVCGMHPHHQETLKKNRVVLAKQLLLSELLEHLLEKDIITLEM
RELIQAKVGSFSQNVELLNLLPKRGPQAFDAFCEALHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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