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Report for CCDS11335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11335.1 Public Homo sapiens 17 STAC2 24 110 108 CCDS HistoryNCBI Gene:342667Re-query CCDS DB by CCDS ID:11335.1Re-query CCDS DB by GeneID:342667See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11335.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333461.6 ENSP00000327509.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333461.6Link to Ensembl Protein Viewer:ENSP00000327509.5Re-query CCDS DB by Nucleotide ID:ENST00000333461Re-query CCDS DB by Protein ID:ENSP00000327509
Original member Current member NCBI NM_198993.5 NP_945344.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198993.5Link to Protein Sequence:NP_945344.1Re-query CCDS DB by Nucleotide ID:NM_198993Re-query CCDS DB by Protein ID:NP_945344Link to BLAST:NP_945344.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_945344.1 411 Q6ZMT1-1 411 100% 0 0

Chromosomal Locations for CCDS 11335.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 39212292 39212396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39212995 39213132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39213507 39213558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39214233 39214330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39214791 39214861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39214951 39215023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39215118 39215230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39216810 39216900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39217076 39217173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39217867 39218173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39225413 39225502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGACCGAGATGAGCGAGAAGGAGAACGAACCGGATGACGCGGCCACCCACAGCCCCCCAGGGACCGTCT
CCGCCCTCCAGGAAACCAAGCTCCAGCGATTCAAGCGCTCCCTCTCCCTCAAGACCATCCTCCGAAGTAA
GAGCTTGGAGAACTTCTTCCTTCGCTCGGGCTCTGAGCTCAAGTGCCCCACCGAGGTGCTGCTGACGCCC
CCAACCCCACTGCCCCCTCCCTCCCCACCACCCACAGCCTCGGACAGGGGCCTGGCTACCCCATCCCCCT
CCCCATGCCCAGTCCCACGCCCCCTGGCAGCGCTCAAACCAGTGAGGCTGCACAGCTTCCAGGAACATGT
CTTCAAGCGAGCTAGCCCTTGTGAGCTGTGCCACCAGCTCATCGTAGGAAACTCCAAACAGGGCTTGCGA
TGTAAGATGTGCAAAGTCAGCGTCCACCTCTGGTGCTCTGAGGAGATCTCCCACCAGCAATGCCCAGGCA
AGACGTCCACCTCCTTCCGCCGCAACTTCAGTTCCCCTCTCCTGGTGCATGAGCCGCCACCAGTCTGTGC
CACAAGCAAAGAGTCCCCACCCACTGGGGACAGTGGGAAGGTGGACCCTGTCTACGAGACCCTGCGCTAT
GGCACCTCCCTGGCACTGATGAACCGCTCCAGTTTCAGCAGCACCTCTGAGTCCCCGACAAGGAGCCTGA
GTGAGCGGGATGAGCTGACCGAGGATGGGGAAGGCAGCATCCGCAGCTCTGAGGAGGGGCCTGGTGACAG
TGCATCTCCAGTATTCACAGCCCCAGCAGAGAGTGAAGGGCCAGGACCAGAGGAGAAGAGTCCTGGACAG
CAGCTCCCCAAAGCCACCCTGCGGAAGGATGTGGGGCCCATGTACTCCTACGTTGCACTCTACAAGTTTC
TGCCCCAGGAGAACAATGATCTGGCTCTGCAGCCTGGAGATCGGATCATGCTGGTGGATGACTCTAACGA
GGACTGGTGGAAGGGCAAGATCGGCGACCGGGTTGGCTTCTTCCCAGCTAATTTTGTGCAACGGGTGAGG
CCAGGCGAGAATGTTTGGCGCTGCTGCCAACCCTTCTCCGGGAACAAGGAACAGGGTTACATGAGCCTCA
AGGAGAACCAGATCTGCGTGGGCGTGGGCAGAAGCAAGGATGCTGACGGCTTCATCCGCGTCAGCAGTGG
CAAGAAGCGGGGCCTGGTGCCAGTCGACGCCCTGACTGAGATCTGA

Translation (411 aa):
MTEMSEKENEPDDAATHSPPGTVSALQETKLQRFKRSLSLKTILRSKSLENFFLRSGSELKCPTEVLLTP
PTPLPPPSPPPTASDRGLATPSPSPCPVPRPLAALKPVRLHSFQEHVFKRASPCELCHQLIVGNSKQGLR
CKMCKVSVHLWCSEEISHQQCPGKTSTSFRRNFSSPLLVHEPPPVCATSKESPPTGDSGKVDPVYETLRY
GTSLALMNRSSFSSTSESPTRSLSERDELTEDGEGSIRSSEEGPGDSASPVFTAPAESEGPGPEEKSPGQ
QLPKATLRKDVGPMYSYVALYKFLPQENNDLALQPGDRIMLVDDSNEDWWKGKIGDRVGFFPANFVQRVR
PGENVWRCCQPFSGNKEQGYMSLKENQICVGVGRSKDADGFIRVSSGKKRGLVPVDALTEI


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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