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Report for CCDS4035.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4035.1 Public Homo sapiens 5 AGGF1 24 110 108 CCDS HistoryNCBI Gene:55109Re-query CCDS DB by CCDS ID:4035.1Re-query CCDS DB by GeneID:55109See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4035.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312916.12 ENSP00000316109.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000312916.12Link to Ensembl Protein Viewer:ENSP00000316109.7Re-query CCDS DB by Nucleotide ID:ENST00000312916Re-query CCDS DB by Protein ID:ENSP00000316109
Original member Current member NCBI NM_018046.5 NP_060516.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018046.5Link to Protein Sequence:NP_060516.2Re-query CCDS DB by Nucleotide ID:NM_018046Re-query CCDS DB by Protein ID:NP_060516Link to BLAST:NP_060516.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060516.2 714 Q8N302-1 714 100% 0 0

Chromosomal Locations for CCDS 4035.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 77030767 77030976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77034418 77034520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77035541 77035743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77036556 77036720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77039531 77039719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77046347 77046677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77048161 77048272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77048936 77048987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77052706 77052807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77053965 77054130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77055514 77055596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77059616 77059743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77061703 77061802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77063052 77063252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2145 nt):
ATGGCCTCGGAGGCGCCGTCCCCGCCGCGGTCGCCGCCGCCGCCCACCTCCCCCGAGCCTGAGCTGGCCC
AGCTAAGGCGGAAGGTGGAGAAGTTGGAACGTGAACTGCGGAGCTGCAAGCGGCAGGTGCGGGAGATCGA
GAAGCTGCTGCATCACACAGAACGGCTGTACCAGAACGCAGAAAGCAACAACCAGGAGCTCCGCACGCAG
GTGGAAGAACTCAGTAAAATACTCCAACGTGGGAGAAATGAAGATAATAAAAAGTCTGATGTAGAAGTAC
AAACAGAGAACCATGCTCCTTGGTCAATCTCAGATTATTTTTATCAGACGTACTACAATGACGTTAGTCT
TCCAAATAAAGTGACTGAACTGTCAGATCAACAAGATCAAGCTATCGAAACTTCTATTTTGAATTCTAAA
GACCATTTACAAGTAGAAAATGATGCTTACCCTGGTACCGATAGAACAGAAAATGTTAAATATAGACAAG
TGGACCATTTTGCCTCAAATTCACAGGAGCCAGCATCTGCATTAGCAACAGAAGATACCTCCTTAGAAGG
CTCATCATTAGCTGAAAGTTTGAGAGCTGCAGCAGAAGCGGCTGTATCACAGACTGGATTTAGTTATGAT
GAAAATACTGGACTGTATTTTGACCACAGCACTGGTTTCTATTATGATTCTGAAAATCAACTCTATTATG
ATCCTTCCACTGGAATTTATTACTATTGTGATGTGGAAAGTGGTCGTTATCAGTTTCATTCTCGAGTAGA
TTTGCAACCTTATCCGACTTCTAGCACAAAACAAAGTAAAGATAAAAAATTGAAGAAGAAAAGAAAAGAT
CCAGATTCTTCTGCAACAAATGAGGAAAAGGATTTGAACTCAGAGGATCAAAAAGCCTTCAGTGTTGAAC
ATACAAGCTGCAATGAGGAAGAAAATTTCGCAAATATGAAAAAGAAGGCCAAAATAGGCATTCATCACAA
AAATAGTCCCCCCAAAGTCACTGTTCCAACTAGTGGAAATACTATAGAGTCTCCTCTTCATGAAAACATC
TCTAATTCAACATCATTTAAAGATGAGAAAATCATGGAGACTGATAGTGAACCAGAGGAAGGTGAAATTA
CAGACTCTCAGACTGAGGATAGTTATGACGAAGCCATTACCAGTGAAGGCAATGTAACTGCAGAAGATAG
TGAGGATGAAGATGAAGACAAAATTTGGCCCCCATGTATTAGAGTAATTGTCATTAGATCACCTGTGTTG
CAGATAGGATCACTCTTTATCATTACTGCTGTAAACCCTGCTACAATTGGAAGAGAAAAGGATATGGAAC
ATACTCTCCGAATCCCTGAAGTTGGTGTCAGTAAGTTTCATGCAGAAATTTATTTTGACCATGACTTACA
AAGTTATGTCCTTGTGGATCAAGGCAGTCAAAATGGCACAATTGTTAATGGAAAACAGATTCTTCAGCCG
AAAACTAAATGTGACCCTTACGTACTTGAGCATGGAGATGAAGTCAAAATTGGAGAAACTGTCTTATCCT
TTCACATTCATCCTGGCAGTGATACCTGTGATGGCTGTGAACCAGGGCAGGTTAGAGCCCACCTTCGCCT
TGATAAGAAAGATGAATCTTTTGTTGGTCCAACACTAAGTAAGGAGGAAAAAGAGTTGGAAAGAAGAAAA
GAATTAAAGAAAATACGAGTAAAATATGGTTTACAGAATACAGAATACGAAGATGAAAAGACATTGAAGA
ATCCAAAATATAAAGATAGAGCTGGAAAACGTAGGGAGCAGGTTGGAAGTGAAGGAACTTTCCAAAGAGA
TGATGCTCCTGCATCTGTTCATTCTGAAATTACTGATAGCAACAAAGGTCGGAAGATGTTGGAGAAGATG
GGTTGGAAGAAAGGAGAGGGCCTGGGGAAGGATGGTGGAGGAATGAAAACGCCGATCCAGCTTCAGCTTC
GGCGAACACATGCAGGCTTGGGGACAGGCAAACCATCCTCATTTGAAGATGTTCACCTTCTCCAAAACAA
GAACAAAAAAAACTGGGACAAAGCACGAGAGCGGTTTACTGAAAACTTCCCAGAAACTAAGCCTCAAAAA
GATGACCCAGGGACCATGCCTTGGGTAAAAGGGACTTTAGAGTGA

Translation (714 aa):
MASEAPSPPRSPPPPTSPEPELAQLRRKVEKLERELRSCKRQVREIEKLLHHTERLYQNAESNNQELRTQ
VEELSKILQRGRNEDNKKSDVEVQTENHAPWSISDYFYQTYYNDVSLPNKVTELSDQQDQAIETSILNSK
DHLQVENDAYPGTDRTENVKYRQVDHFASNSQEPASALATEDTSLEGSSLAESLRAAAEAAVSQTGFSYD
ENTGLYFDHSTGFYYDSENQLYYDPSTGIYYYCDVESGRYQFHSRVDLQPYPTSSTKQSKDKKLKKKRKD
PDSSATNEEKDLNSEDQKAFSVEHTSCNEEENFANMKKKAKIGIHHKNSPPKVTVPTSGNTIESPLHENI
SNSTSFKDEKIMETDSEPEEGEITDSQTEDSYDEAITSEGNVTAEDSEDEDEDKIWPPCIRVIVIRSPVL
QIGSLFIITAVNPATIGREKDMEHTLRIPEVGVSKFHAEIYFDHDLQSYVLVDQGSQNGTIVNGKQILQP
KTKCDPYVLEHGDEVKIGETVLSFHIHPGSDTCDGCEPGQVRAHLRLDKKDESFVGPTLSKEEKELERRK
ELKKIRVKYGLQNTEYEDEKTLKNPKYKDRAGKRREQVGSEGTFQRDDAPASVHSEITDSNKGRKMLEKM
GWKKGEGLGKDGGGMKTPIQLQLRRTHAGLGTGKPSSFEDVHLLQNKNKKNWDKARERFTENFPETKPQK
DDPGTMPWVKGTLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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