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Report for CCDS93473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93473.1 Public Homo sapiens 4 C4orf50 24 110 108 CCDS HistoryNCBI Gene:389197Re-query CCDS DB by CCDS ID:93473.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93473.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000531445.3 ENSP00000437121.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000531445.3Link to Ensembl Protein Viewer:ENSP00000437121.2Re-query CCDS DB by Nucleotide ID:ENST00000531445Re-query CCDS DB by Protein ID:ENSP00000437121
Original member NCBI NM_001364689.2 NP_001351618.1 Updated not alive Link to Nucleotide Sequence:NM_001364689.2Link to Protein Sequence:NP_001351618.1Re-query CCDS DB by Nucleotide ID:NM_001364689Re-query CCDS DB by Protein ID:NP_001351618
Current member NCBI NM_001364689.3 NP_001351618.1 Accepted alive Link to Nucleotide Sequence:NM_001364689.3Link to Protein Sequence:NP_001351618.1Re-query CCDS DB by Nucleotide ID:NM_001364689Re-query CCDS DB by Protein ID:NP_001351618Link to BLAST:NP_001351618.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351618.1 1508 Q6ZRC1 1508 100% 0 0

Chromosomal Locations for CCDS 93473.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 5959375 5959626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 5965024 5965145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 5967414 5967462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 5973659 5973841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 5975899 5975955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 5980174 5980338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 5988347 5990824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 5992803 5992930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 5994347 5994476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6007996 6008532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6011830 6011968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6018145 6018431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4527 nt):
ATGGAGCCAACAGCCAAGGGACGGACTGAGGAGAGTTTCAGCTACGTCATCAGAGCCCCCAGCAGTGAGG
GGTTCGACATAATGAACGTTGATGTGAAGATTGACACATCCTGGATATTCCAGGACATGGAAGATAGTGC
TGAGGAGCGGGAATGTCTTCAGGAAGAAGCAGCTGGCCGCCCAGACATGGATATGGGTGCGCTCAGGAGG
CAGCTGGAGTCCTCCGAGCAGAAGCTGTCAGCAGCAGAGGACAAGTACGTGACATCGGAGTCCGGGCTGA
GAAGCAGAATTCAGGAGCTGGAGCTGTCAGAAAGGAAACTCCTCCGGAAGGTGGACCAGCTGAGCACCCA
CGTGGCCCAGGAGAGAAGCGCCTGGCTCCAGGCCCAGGAGAAGCTGGCGGCGCTGCAGGGGGAGCTGGCC
AGCCAGATCCGGGAGGAGAGCGTGGCCAGGCGGCAGCAGTGGCGGCTGCGGCGGTTGCAGGAGCGGTTGC
GGCGCAAGGACGAGGCACTGGGGCAGCAGGCGGCGGCCCTGGAGCGCTGCCGGCGGACCCAGCGGCGCCA
GCTGGGCCTGGTGCGGGAGCAGGAGCGCGTCCTGCGGGAGCAGGTGCAGCGGCTGGAGCGCAACGTGCGG
CGCCTCTGCCGCGCCGCGGGCCTCCTGCTGGCCCAGTGGGACACCGCGGCCCCAGGCTCCCAGGGCGCCA
CCGAGGCGGCTGCGGAACTGCGCGCCCTGCAGGCGAGGGCAGAGCGCAGCGAGCGCGAGCGGGAAGAGGC
GGCGCGCAGCCTGCAGGAGCACCGGGCCACCGAGCGCCAGCTCCGCGGGCAGCTGGAGGAGCTGCGCTGC
TGCATCTATGGGCTGAAGCTGTCAGAGATTGGCCTGCAGGGCCAGGTGGAGGACCTCGCCCAGCAAAACC
AGTGCCTGCGAGAGGAGCTGGGAGCCCAGGCCCCTATTGGTCACTGCAGCCTGGATGCTCTGGGCTGTGT
TCAGGGTGACTCACTGCCCCTGCCCAGGGAGGAGGCCCTGGACCCCTGCAGAAGCCAAGACTGGCGGAAC
TCCCTGCGGTCCAATGATGCACCCAGACAAAGGGCCCCAGCAGGCCAGTCCCCAGAGGGGCCCTGCACCT
GGAGCCGCATCAGGCCTGGACGGGCCTCTTCTGTTTTGGCTCCAGGCCCGGAGACCACAAGCGAGCTCCC
CAGAGACCTGGCCGGATCCAACCGTGAACAGCTTACTCTGGCAGAGCCCAGCTTGGATGAACAGATTCTT
CTCCTGGTCTGTGGCTGCCCACCAGAGGAGTGCTTGGACGAGTCACTCCTCCGCATGGACCTGGCCTGGA
TTTCAGAGAATCTAGCAGCTGACCCAGCTGCAGAAGCCTTTCTCCTGGTGCAGACATCCGCACTCCCTCT
CTGGGGGCCGGCTGGGGACTCCGCTTCTTGGCGACCACTGCTGCTCCAGGAGGTTCCCTCAGATGGACAA
AAAATCCAAGAAGAGTTGGCCACCAGGTCCCCGCCTCCTCCCAAAGCCACAGGACACCCAGGCTGGGATT
GTCACCAGACAAGAGGCCGCGGTGCCTCCCTCTTCCACGAGGCCCCCTACATTTCAAATCACCCATTTCT
GAAAAAACACCCCAAGGATCTGAAAGACACTTGGAACAATGGAGGAGGAAGCCTTGCGGGGAGAACTGAA
GAGGGGAAGGCAAGGGGGACTTTGGGCAGGAAGGGGAAAAACCTTGGTGACAAGTACCAGCTAAGTCAGG
AAAGCCATCAGAACCTGAGCTTGGAGAATGGGGCTGGAGCTGCAGAGGACGTGCAGGATCAGAATGGGGC
TTCAGAGACTAAGGCCGCCACCTGCCGCCCTGGGTCCTGGCAGGAGTTTTTGATGCCTCTTCTACAGGGG
GAGGCCTCAGTATCAAAGGAGGGTCCCGAATCCCTGAGCAGGAGGGAAAGGGTGGAAGGATACGTCTGGG
GTCTCCGAGGAGGACTGTCATCAGAGAATGAGGAAGTGGCACCCCCAGCCACCTTCTCCAGGGCTCATGA
GACCAAAGAGCCATGGCCAACAGACAGTCAGCTCCTCGCAGGGAAAGTCAGAGCCACTGGGAGGACAGCT
AGGGGCAAGGAGGAAAACCAAGTGTGGCTTGGAAATGCTCTGCTTCTGCAAGGAGGAAGCCTGGAGGACA
AAGGGCTAGAGGAAGAGGATGAGATGCCGCATCAAGAAGCATCCGGTCTGGGGTGCAGGGGTGCCCCCGA
GGAGCCTGACTCCCAGGAACATGAGAGCAAGGAAATGCTTTTCTTTGCAGGAGAGACAGGTTTGCCACTG
TTTCCCAGATTTGCCTTATCAGTTGAAGGGGCCGAACCCACTGATCATGGTCATCCACAGGCTGTGAGCA
AAGGACACAACAGGTGTGCACTCACAATCGATGAGCTTGCACAGGACGTGGAGGCTTGTTTCCAGCAGCT
GTCCACCCTGCAGCCGGGCAGCAGGGGCTGGCAGTGCTCAGCCTCTGCATGTAGGGGAGAGAACTGGAGC
TTTGCTCAGAAGTGGCACAGTGGCTGGGAGAGAGCTCACTCTCAGCAGGTTTGGGGAAATTGGGGTATTT
GTTCTAATGAAGAAGCGAAGTCTAAAGAGAGTGGTGAAGGTGATAAGCCGGGAAAGACCACGGCCCTGGG
CACCAGCGAAGTTCCTGGTAACCCAGGGACACTGCCTCATTGGGATGAAGCCAGCCCAAACCCTCCACAG
GGGCCTGCTGAGCCCTGGGGTGCCCTCGAGAGAGTGAGGAGCAGGTTTCATCAGCTCATTTCTGGATTGA
AGAAACAGAGAAGCCAGATTTTACATGACAACACCAAACTTCACGGAGACCAAGAGAGGTTCCATGAAAG
AGTGTGCGCCCTTGAAAGAGAGAGAGAGAGAGAGGTGACAAAAATATCCAGGCTCGAGCGGGATAACCAC
AGGCTGGTAGGGGACATCTCTCAGTTAAAGAAAGAACTGGATCAATATTTACAGGCAATCTCTGACCTTG
AAGACTGCAATGGGAAGAGTTACTGCAAAATTTTGGAGCTTGAAGAGGAAAATGAAACACTGAAAGGGAA
TCTGGGCCAACTCCAGAAAGCCACGTCTGAGAGTGTCAGGAAATCCAAAGACACGATGGAGCAAGTCACC
CTGGAAAACTGGAAGCTCCAGACACTGATCTCGGAGCTTGGCGTCAGTTATAAAGAGCTGATAAAGGATA
TCGTGCTAGGAATAGAAGACATGATCCGGGCCTTAAGTGGGGAGAACGAGCACCTTCTACGCAGGGTCCA
TGTCCTGGAGAGGGAAGTCACCTTGCAGAGGAGCACGGATCAGGGGCGTTTGGTGAGGGGAAGGGAGCAC
CTCCAGGGAAAAGCCAAGATGCACGCTCTAGACAAAGAGGTGCAGGTGACTCCACTCACAGGACAGCTGC
TTTCAAGAGCCTGTGGGCCACCCTTGGAGGAGGAAATGAGTCTGGCTGCAGGGCAGACAGGACCTTCCAC
AGGCACCGGGAATTCCAGACGCGGTGCTGATTCTCCCCCTCCATCGCTGGTCTGGAGAAACACTGGTGTA
GCCAATGCCCTGCAAGGAAATGTCAGTGGAGCAGAAGTGAAAGAAGCACATTTGGAGAAAGAGGAGAAGA
GGCCCAGGTGTTCTGTGGCTCAGGGGCAAGCTCTGAGCTCCCTGAGCAATGGCCCCATGCTCCGGGACTC
AGAGGCCGAGGTTACTGAGGAGGATCCCAGGCTGCGGGCCCAGCAGCTCCATCACCGGGTGCTGACCCTG
CAGTGCCAGCTCAGGGACCAGGGCGCTGCCCACCAGGCGTCTCTGGACGAGGCCACCCGCCTCCAGGAGG
AGCTCCAGGCCAAGCTTGAAGAACTTCAGAAAAAGCAACATGAAGCAAAGTTGGCAGTGACTCCCCTGAA
GGCCAAGATAGCTTCCCTCGTCCGGAAGTGCCGGGAGAGGAACCGCCTGATCACCCACCTGCTGCAGGAG
CTGCACAGACATGGGCTGGGGAACCTCCTGCTCTCCGAGCTGGCGCAGAACATGCTCAACGACGTGGCAC
TGGCTGAGTACACGGCCACCTTCCTGGCTCCGGGAGTCCCAGAGACAAGCCACCACCTGGACGTCAAGTC
TGAGATGACGGCAGCTTTAAGAGCTCAGACATACCTCTTGAATCCTGAAATGGACAGTGTCCTCCAAAGC
TCATTGTCTTCAGAGTCCTGGCCTATTCCCGAGCCGGAGTGGCCAGCACAGACAGCCCAACTGGATTCTC
TGAAGCTCCCTCTGTCCTTGGTGTCCACGCTTGATCCTGGAACGTGCCTGGCAGCGGTCACTGTGGAACC
AGGTCTCCCCGCACAACGTCTGCAAGAAAAAGGCGGAATGCCCTGTCCTGCCCTCCAAGTCGATAACGTC
CCAGCACCCTCTGAGCTCCTGAGCCCAGCAAGGATCCTGGCTTTTCACCAAGAGCTTAGACAAAGCATTT
GCAGCAATTCCCAGGTCCATAAATCACCGCTGGAGTTAGAAATGTAA

Translation (1508 aa):
MEPTAKGRTEESFSYVIRAPSSEGFDIMNVDVKIDTSWIFQDMEDSAEERECLQEEAAGRPDMDMGALRR
QLESSEQKLSAAEDKYVTSESGLRSRIQELELSERKLLRKVDQLSTHVAQERSAWLQAQEKLAALQGELA
SQIREESVARRQQWRLRRLQERLRRKDEALGQQAAALERCRRTQRRQLGLVREQERVLREQVQRLERNVR
RLCRAAGLLLAQWDTAAPGSQGATEAAAELRALQARAERSEREREEAARSLQEHRATERQLRGQLEELRC
CIYGLKLSEIGLQGQVEDLAQQNQCLREELGAQAPIGHCSLDALGCVQGDSLPLPREEALDPCRSQDWRN
SLRSNDAPRQRAPAGQSPEGPCTWSRIRPGRASSVLAPGPETTSELPRDLAGSNREQLTLAEPSLDEQIL
LLVCGCPPEECLDESLLRMDLAWISENLAADPAAEAFLLVQTSALPLWGPAGDSASWRPLLLQEVPSDGQ
KIQEELATRSPPPPKATGHPGWDCHQTRGRGASLFHEAPYISNHPFLKKHPKDLKDTWNNGGGSLAGRTE
EGKARGTLGRKGKNLGDKYQLSQESHQNLSLENGAGAAEDVQDQNGASETKAATCRPGSWQEFLMPLLQG
EASVSKEGPESLSRRERVEGYVWGLRGGLSSENEEVAPPATFSRAHETKEPWPTDSQLLAGKVRATGRTA
RGKEENQVWLGNALLLQGGSLEDKGLEEEDEMPHQEASGLGCRGAPEEPDSQEHESKEMLFFAGETGLPL
FPRFALSVEGAEPTDHGHPQAVSKGHNRCALTIDELAQDVEACFQQLSTLQPGSRGWQCSASACRGENWS
FAQKWHSGWERAHSQQVWGNWGICSNEEAKSKESGEGDKPGKTTALGTSEVPGNPGTLPHWDEASPNPPQ
GPAEPWGALERVRSRFHQLISGLKKQRSQILHDNTKLHGDQERFHERVCALEREREREVTKISRLERDNH
RLVGDISQLKKELDQYLQAISDLEDCNGKSYCKILELEEENETLKGNLGQLQKATSESVRKSKDTMEQVT
LENWKLQTLISELGVSYKELIKDIVLGIEDMIRALSGENEHLLRRVHVLEREVTLQRSTDQGRLVRGREH
LQGKAKMHALDKEVQVTPLTGQLLSRACGPPLEEEMSLAAGQTGPSTGTGNSRRGADSPPPSLVWRNTGV
ANALQGNVSGAEVKEAHLEKEEKRPRCSVAQGQALSSLSNGPMLRDSEAEVTEEDPRLRAQQLHHRVLTL
QCQLRDQGAAHQASLDEATRLQEELQAKLEELQKKQHEAKLAVTPLKAKIASLVRKCRERNRLITHLLQE
LHRHGLGNLLLSELAQNMLNDVALAEYTATFLAPGVPETSHHLDVKSEMTAALRAQTYLLNPEMDSVLQS
SLSSESWPIPEPEWPAQTAQLDSLKLPLSLVSTLDPGTCLAAVTVEPGLPAQRLQEKGGMPCPALQVDNV
PAPSELLSPARILAFHQELRQSICSNSQVHKSPLELEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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