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Report for CCDS42809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42809.1 Public Homo sapiens 2 C2orf80 24 110 108 CCDS HistoryNCBI Gene:389073Re-query CCDS DB by CCDS ID:42809.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42809.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341287.9 ENSP00000343171.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341287.9Link to Ensembl Protein Viewer:ENSP00000343171.4Re-query CCDS DB by Nucleotide ID:ENST00000341287Re-query CCDS DB by Protein ID:ENSP00000343171
Original member Current member NCBI NM_001099334.3 NP_001092804.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099334.3Link to Protein Sequence:NP_001092804.2Re-query CCDS DB by Nucleotide ID:NM_001099334Re-query CCDS DB by Protein ID:NP_001092804Link to BLAST:NP_001092804.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092804.2 193 Q0P641 193 100% 0 0

Chromosomal Locations for CCDS 42809.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 208165807 208165815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 208170945 208171063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 208171988 208172075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 208180745 208180816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 208181218 208181305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 208182965 208183047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 208184951 208185032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 208186946 208186986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGAAAGAAGGCTCATAAAGAAGGAAATGAAAAAGCTCTTGGGAGATTATATTGGCATCAGACTTCGGG
AAAATGAATTTGACCCAAAAGGAAGACGGCAACTCACCTTTCTAGATGATATGGCACACTATGACTTGGC
CATCAGTGTTGCTTTGCAATGGCTGGATCCCTCAGAAGACTTAACTTGGCTGGAGTGGGAGGAACTGAAA
ATACCACTCCATGGCAGACCCATATATCCAAATCGTAGAGAACGAGAAGCTATGATTTTATCATCTTATG
CTGGAATCTTAATGAACAGTATCCCGATTGAGGAAGTCTTTAAAATTTATGGGGCTGATTCTTCTGCCGA
TTCTGGTACCATCAAGGTTCCCCGAGTTTCATCTCTCTGCCTCTCCTTGCACCCCTTTGCCATGTTAACA
GCACCCAAAGCAGCAGCATACGCCCGCAAACAGAGTGTCAAGTCAAGAAAGGTAACAACAAATAAAAATG
CCACCAGCATCTCTGCAAAGGAAGCAAATGCCACAGAATGGAAATCATCACAAAGGTTTTCAGACACACA
GCCAAAGCACAAAGTCACTTAG

Translation (193 aa):
MERRLIKKEMKKLLGDYIGIRLRENEFDPKGRRQLTFLDDMAHYDLAISVALQWLDPSEDLTWLEWEELK
IPLHGRPIYPNRREREAMILSSYAGILMNSIPIEEVFKIYGADSSADSGTIKVPRVSSLCLSLHPFAMLT
APKAAAYARKQSVKSRKVTTNKNATSISAKEANATEWKSSQRFSDTQPKHKVT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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