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Report for CCDS42682.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42682.1 Public Homo sapiens 2 TSPYL6 24 110 108 CCDS HistoryNCBI Gene:388951Re-query CCDS DB by CCDS ID:42682.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42682.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317802.9 ENSP00000417919.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317802.9Link to Ensembl Protein Viewer:ENSP00000417919.2Re-query CCDS DB by Nucleotide ID:ENST00000317802Re-query CCDS DB by Protein ID:ENSP00000417919
Original member Current member NCBI NM_001003937.3 NP_001003937.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001003937.3Link to Protein Sequence:NP_001003937.2Re-query CCDS DB by Nucleotide ID:NM_001003937Re-query CCDS DB by Protein ID:NP_001003937Link to BLAST:NP_001003937.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003937.2 410 Q8N831 410 100% 0 0

Chromosomal Locations for CCDS 42682.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 54254919 54256151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGAGCCTCCCGGAGAGTCCTCACAGCCCCGCTACTCTCGACTATGCTCTGGAAGACCCGCACCAGGGCC
AGAGGTCCCGAGAAAAGAGCAAGGCGACAGAGGTAATGGCAGATATGTTTGATGGCCGCTTGGAGCCAAT
CGTGTTCCCACCGCCCCGGCTTCCAGAGGAGGGGGTCGCGCCCCAGGATCCCGCAGATGGTGGCCATACT
TTCCACATCTTGGTCGATGCGGGTCGCAGTCATGGAGCCATCAAAGCGGGGCAGGAAGTGACTCCACCAC
CCGCGGAGGGCCTAGAAGCGGCCTCTGCCTCGCTGACAACTGACGGCAGCCTCAAAAATGGCTTTCCGGG
TGAAGAGACGCACGGCCTAGGTGGGGAGAAGGCTCTAGAAACCTGTGGGGCAGGGAGGTCGGAGTCTGAA
GTGATTGCAGAGGGGAAGGCCGAGGACGTGAAGCCTGAGGAGTGTGCCATGTTCTCAGCCCCAGTGGATG
AGAAGCCAGGAGGCGAAGAAATGGACGTGGCGGAAGAAAACAGAGCAATAGATGAGGTAAACAGGGAGGC
AGGGCCTGGGCCCGGGCCCGGGCCCCTGAACGTGGGTCTCCACCTGAACCCCCTGGAGTCCATCCAGCTG
GAACTGGACTCCGTGAATGCAGAGGCTGACAGGGCGCTCCTGCAGGTGGAGCGCAGGTTTGGGCAGATTC
ATGAATACTACCTGGAGCAGAGGAATGACATCATTCGCAATATCCCGGGCTTCTGGGTCACTGCTTTCCG
CCACCACCCACAGCTGTCTGCCATGATTAGAGGCCAAGATGCCGAGATGTTAAGCTACTTAACCAATTTG
GAAGTGAAGGAGCTCAGACACCCTAGGACAGGCTGCAAGTTTAAGTTCTTCTTTCAAAGAAACCCTTACT
TCAGAAACAAGCTGATTGTAAAGGTGTATGAGGTCAGATCCTTCGGCCAAGTGGTGTCTTTTTCCACTCT
AATCATGTGGCGCCGGGGCCATGGACCCCAGTCCTTCATTCATAGGAACCGACATGTCATCTGCAGCTTC
TTCACCTGGTTTTCAGACCACAGCCTTCCAGAGTCCGACAGGATTGCTCAGATTATTAAAGAGGACCTCT
GGTCAAATCCACTGCAGTACTACCTGTTGGGTGAAGACGCCCATAGAGCTAGACGTCGCCTGGTAAGGGA
GCCAGTGGAGATCCCCAGGCCCTTTGGGTTCCAGTGTGGTTAA

Translation (410 aa):
MSLPESPHSPATLDYALEDPHQGQRSREKSKATEVMADMFDGRLEPIVFPPPRLPEEGVAPQDPADGGHT
FHILVDAGRSHGAIKAGQEVTPPPAEGLEAASASLTTDGSLKNGFPGEETHGLGGEKALETCGAGRSESE
VIAEGKAEDVKPEECAMFSAPVDEKPGGEEMDVAEENRAIDEVNREAGPGPGPGPLNVGLHLNPLESIQL
ELDSVNAEADRALLQVERRFGQIHEYYLEQRNDIIRNIPGFWVTAFRHHPQLSAMIRGQDAEMLSYLTNL
EVKELRHPRTGCKFKFFFQRNPYFRNKLIVKVYEVRSFGQVVSFSTLIMWRRGHGPQSFIHRNRHVICSF
FTWFSDHSLPESDRIAQIIKEDLWSNPLQYYLLGEDAHRARRRLVREPVEIPRPFGFQCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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