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Report for CCDS10055.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10055.3 Public Homo sapiens 15 CCDC9B 24 110 108 CCDS HistoryNCBI Gene:388115Re-query CCDS DB by CCDS ID:10055.3See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10055.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397536.7 ENSP00000380670.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397536.7Link to Ensembl Protein Viewer:ENSP00000380670.3Re-query CCDS DB by Nucleotide ID:ENST00000397536Re-query CCDS DB by Protein ID:ENSP00000380670
Original member Current member NCBI NM_207380.3 NP_997263.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207380.3Link to Protein Sequence:NP_997263.3Re-query CCDS DB by Nucleotide ID:NM_207380Re-query CCDS DB by Protein ID:NP_997263Link to BLAST:NP_997263.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997263.3 490 Q6ZUT6-5 490 100% 0 0

Chromosomal Locations for CCDS 10055.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 40335158 40335700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40335784 40335826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40336574 40336664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40336760 40336813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40337388 40337446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40337724 40337893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40338535 40338660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40338748 40338903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40339512 40339619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40339905 40340015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40340808 40340819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGCACTCGGCTGGAACTCCCAGAGCCGAGTCCCCCATGAGCAGGCAGGAGAAGGACGCAGAGCTGGATC
GGAGGATAGTTGCCCTGCGCAAGAAGAACCAGGCCTTGCTCCGCAGGTACCAGGAGATCCAGGAGGACCG
TCGGCAGGCAGAGCAGGGGGGGATGGCTGTGACCACACCAGCACTCCTCCAGCCTGATGGCCTCACCGTT
ACCATCAGCCAGGTTCCCGGTGAAAAGCGGGTGGTTAGCAGGAACTGGGCAAGGGGTACCTGTGGACCCA
GAGTGACCAACGAGATGCTTGAGGATGAGGATGCTGAGGACCACGGGGGTACTTTCTGCTTAGGGGAGCT
GGTGGAGCTGGCTGTGACCATGGAGAACAAAGCAGAGGGCAAACGGATTGTAAGTGAAAAGCCTACCAGA
GCAAGGAACCAAGGCATAGAGGGGTCACCTGGAGGGCGTGTGACCCGAAGCCCCCCCACGCAGGTGGCCA
TCAGCTCAGATTCTGCACGGAAGGGTTCTTGGGAGCCCTGGAGCCGGCCGGTGGGGGAGCCCCCGGAGGC
GGGCTGGGACTATGCCCAGTGGAAGCAGGAGCGGGAGCAGATCGACCTAGCCCGCCTCGCCCGGCACAGA
GACGCACAGGGTGACTGGCGCCGCCCGTGGGACCTGGACAAGGCCAAGTCCACGCTACAGGACTGCAGCC
AGCTGAGGGGAGAAGGCCCGGCCAGGGCAGGCAGCAGAAGGGGTCCCAGGAGCCACCAGAAACTACAGCC
CCCACCATTGCTCCCTGATGGAAAAGGTCGGGGCGGGCAAGCCAGCAGACCCTCGGTGGCACCAGCCACA
GGCAGCAAAGCCCGGGGCAAGGAGAGGCTGACTGGCAGGGCCCGAAGGTGGGATATGAAGGAAGACAAGG
AGGAGCTGGAAGGTCAGGAGGGAAGCCAAAGCACCAGAGAGACTCCCAGTGAGGAGGAGCAAGCCCAGAA
GCAGAGCGGGATGGAGCAGGGCCGACTGGGGAGCGCCCCTGCAGCCAGCCCAGCCCTGGCATCCCCAGAG
GGGCCGAAGGGGGAGTCAGTGGCTTCCACAGCCAGCTCAGTCCCCTGCTCTCCACAGGAGCCTGACTTGG
CTCCTCTTGACCTCTCCCTAGGAGGGGCTGGCATCCCTGGGCCCAGGGAGAGCGGGTGTGTGCTCGGTCT
GAGGCCTGGGGCCCAGGAGAGCCCTGTGTCTTGGCCAGAGGGCTCTAAGCAGCAGCCCCTGGGGTGGAGC
AATCACCAGGCTGAGCTGGAAGTACAGACTTGCCCTGAGCCACAGAGAGGAGCAGGGCTCCCAGAGCCCG
GAGAAGACAGGTCTGGCAAGTCTGGGGCCCAGCAGGGCCTGGCCCCGAGAAGCCGGCCCACGAGAGGAGG
CAGCCAAAGGTCGAGAGGCACAGCAGGTGTGAGGCGCAGGACAGGGCGCCCTGGCCCGGCAGGAAGATGC
TGA

Translation (490 aa):
MHSAGTPRAESPMSRQEKDAELDRRIVALRKKNQALLRRYQEIQEDRRQAEQGGMAVTTPALLQPDGLTV
TISQVPGEKRVVSRNWARGTCGPRVTNEMLEDEDAEDHGGTFCLGELVELAVTMENKAEGKRIVSEKPTR
ARNQGIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSRPVGEPPEAGWDYAQWKQEREQIDLARLARHR
DAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPAT
GSKARGKERLTGRARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPE
GPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWS
NHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAGRC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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