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Report for CCDS31951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31951.1 Public Homo sapiens 13 SHISA2 24 110 108 CCDS HistoryNCBI Gene:387914Re-query CCDS DB by CCDS ID:31951.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31951.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319420.4 ENSP00000313079.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319420.4Link to Ensembl Protein Viewer:ENSP00000313079.3Re-query CCDS DB by Nucleotide ID:ENST00000319420Re-query CCDS DB by Protein ID:ENSP00000313079
Original member Current member NCBI NM_001007538.2 NP_001007539.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001007538.2Link to Protein Sequence:NP_001007539.1Re-query CCDS DB by Nucleotide ID:NM_001007538Re-query CCDS DB by Protein ID:NP_001007539Link to BLAST:NP_001007539.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007539.1 295 Q6UWI4 295 100% 0 0

Chromosomal Locations for CCDS 31951.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 26046513 26047066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 26050642 26050975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGTGGGGCGCTCGCCGCTCGTCCGTCTCCTCATCCTGGAACGCCGCTTCGCTCCTGCAGCTGCTGCTGG
CTGCGCTGCTGGCGGCGGGGGCGAGGGCCAGCGGCGAGTACTGCCACGGCTGGCTGGACGCGCAGGGCGT
CTGGCGCATCGGCTTCCAGTGTCCCGAGCGCTTCGACGGCGGCGACGCCACCATCTGCTGCGGCAGCTGC
GCGTTGCGCTACTGCTGCTCCAGCGCCGAGGCGCGCCTGGACCAGGGCGGCTGCGACAATGACCGCCAGC
AGGGCGCTGGCGAGCCTGGCCGGGCGGACAAAGACGGCCCCGACGGCTCGGCAGTGCCCATCTACGTGCC
GTTCCTCATTGTTGGCTCCGTGTTTGTCGCCTTTATCATCTTGGGGTCCCTGGTGGCAGCCTGTTGCTGC
AGATGTCTCCGGCCTAAGCAGGATCCCCAGCAGAGCCGAGCCCCAGGGGGTAACCGCTTGATGGAGACCA
TCCCCATGATCCCCAGTGCCAGCACCTCCCGGGGGTCGTCCTCACGCCAGTCCAGCACAGCTGCCAGTTC
CAGCTCCAGCGCCAACTCAGGGGCCCGGGCGCCCCCAACAAGGTCACAGACCAACTGTTGCTTGCCGGAA
GGGACCATGAACAACGTGTATGTCAACATGCCCACGAATTTCTCTGTGCTGAACTGTCAGCAGGCCACCC
AGATTGTGCCACATCAAGGGCAGTATCTGCATCCCCCATACGTGGGGTACACGGTGCAGCACGACTCTGT
GCCCATGACAGCTGTGCCACCTTTCATGGACGGCCTGCAGCCTGGCTACAGGCAGATTCAGTCCCCCTTC
CCTCACACCAACAGTGAACAGAAGATGTACCCAGCGGTGACTGTATAA

Translation (295 aa):
MWGARRSSVSSSWNAASLLQLLLAALLAAGARASGEYCHGWLDAQGVWRIGFQCPERFDGGDATICCGSC
ALRYCCSSAEARLDQGGCDNDRQQGAGEPGRADKDGPDGSAVPIYVPFLIVGSVFVAFIILGSLVAACCC
RCLRPKQDPQQSRAPGGNRLMETIPMIPSASTSRGSSSRQSSTAASSSSSANSGARAPPTRSQTNCCLPE
GTMNNVYVNMPTNFSVLNCQQATQIVPHQGQYLHPPYVGYTVQHDSVPMTAVPPFMDGLQPGYRQIQSPF
PHTNSEQKMYPAVTV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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