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Report for CCDS73295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73295.1 Public Homo sapiens 11 MS4A14 24 110 108 CCDS HistoryNCBI Gene:84689Re-query CCDS DB by CCDS ID:73295.1Re-query CCDS DB by GeneID:84689See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 73295.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395001.5 ENSP00000378449.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395001.5Link to Ensembl Protein Viewer:ENSP00000378449.2Re-query CCDS DB by Nucleotide ID:ENST00000395001Re-query CCDS DB by Protein ID:ENSP00000378449
Original member Current member NCBI NM_001261827.2 NP_001248756.1 Accepted alive Link to Nucleotide Sequence:NM_001261827.2Link to Protein Sequence:NP_001248756.1Re-query CCDS DB by Nucleotide ID:NM_001261827Re-query CCDS DB by Protein ID:NP_001248756Link to BLAST:NP_001248756.1

Chromosomal Locations for CCDS 73295.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60396579 60396716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60397852 60397980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60402912 60403061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60405889 60405987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60415437 60417008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2088 nt):
ATGGAGTCAACATCCCAGGACAGAAGGGCAACTCACGTCATCACTATAAAACCAAACGAAACTGTATTGA
CTGCATTTCCCTACAGACCTCATAGCTCTCTGCTGGATTTTCTGAAGGGAGAGCCAAGAGTCTTGGGGGC
TACCCAGATCCTGCTTGCTCTAATCATTGTGGGCTTTGGAACTATATTTGCACTTAATTACATCGGTTTC
TCCCAAAGACTTCCCCTTGTTGTCCTCACAGGATATCCATTCTGGGGAGCACTTATTGGTCAAGGTGTCA
CGGGCATGAATGTTATCAGCTCCTTGGTTGCGATAACTGGGATTACTTTCACCATTCTCAGCTACAGACA
TCAAGACAAGTACTGCCAGATGCCATCCTTTGAAGAAATATGTGTTTTCAGTAGAACTCTTTTCATTGGA
ATTTTGTTAATCTTACTGATCATCAGCATAGCAGAGCTCAGCATCTCTGTGACTATTGCATCCTTTAGAA
GCAAGTGCTGGACACAGTCAGATGAGGTTCTGTTTTTCTTGCCTTCGGATGTTACTCAAAATAGTGAACA
ACCTGCCCCAGAAGAAAATGATCAATTACAATTTGTGCTTCAAGAAGAGTTTTCCAGTGATGATTCAACA
ACAAATGCACAATCTGTTATCTTTGGAGGCTATGCTTTCTTCAAGTTAACACTCTCTAGGAGTCCTTTAG
TCTCCCAACCAGGTAATAAAGGTAGAGAATTTGTGCCAGATGAACAAAAGCAAAGTATCCTTCCATCTCC
CAAATTTTCAGAGGAAGAAATTGAACCTTTGCCTCCCACACTAGAGAAAAAGCCCTCAGAAAATATGTCC
ATTCAGCTAGACTCTACATTTAAACAAATGAAAGATGAAGATCTACAATCTGCTATTGTACAACCTTCTC
AAATGCAAACCAAGCTTCTGCAGGACCAAGCTGCGTCACTCCAAGTTTTTCCATCCCATTCTGCACTAAA
ACTCGAAGATATATCACCTGAAGACTTGCCATCCCAAGCTCTACCAGTAGAAGGCCTGTCAGAACAAACC
ATGCCATCTAAGTCTACATCATCCCATGTCAAACAGTCTTCTAATCTGACAGCTAATGACCTGCCCCCTC
AAGGCATACTATCCCAAGACACATCATCTCAAGATATGCTGTTTCATGACATGACATCCCAAGATATGCA
ATCCCTAGATATGCTATCTCAAGACACACCATCCCACGCCATGCCACCTCAAGACATACCTTCCCAAGAT
ATGCTATCCCAAGCTCTATCAGCGCATGCCATATTACCTGAAGCCTCAACATCCCATATTGTGCAGTTCC
CTGAAATACAACACCTACTTCAGCAGCCCCCAGATCTTCAACCAGAAAACACTGAACCTCAAAACCAGCA
AATTTTACAAATGTCATATCAAGATATTAGATCAGAAGTTATGGAAGAGACCAAAGAATGGAAATCTGAG
GAGGAACTCCATAGAAGAAAATCCTCAAGACGGCATTCCTTAAACCAGCAAACCAAAGCCTTGCAATACT
TAAGGAGACATTCTTTAGACGTGCAAGCCAAAGGCCAGAAATCCTCAAAGAGGCATTCCTTAGATCAGCA
AAGCAAAGGCTGGCAATCTCCAAAGCAGAAATCCTTAGACCAGCAAATCAAAGACTGGCTATCCCCAAAG
AGGCACTCCGTAGATAAGCAAGCTCAACTTAATCAAACTAAAGAGCAACTCCCAGATCAGCAAGCTGAAG
ATCAGCAAGCCAAAGGGGAACAATACCCAGAAGGACAATCTAAAGATGGACAAGTTAAAGACCAGCAGAC
TGATAAGGAGCAAAACTCAAAGAAGCAAACCCAGGATCAGCAAACTGAAGACCAGCCGGCCCAAGAGAAG
AAATCCCCGAAAGGACAATTCCAAAATGTTCAAGCCGAAGGACAGCAAGCTCAGGTGGAGAAAGTGCCAA
AACTGTTATGCCAAGATTCAGAATCCCAAATACAGCAATACCAATTCTGGCAATTCCACAAAGGCAATCT
CCAGGCTGGACAACCCAGGACTGTCAATCTTTTGGCCAAGAATCCCCTGACTGGATAA

Translation (695 aa):
MESTSQDRRATHVITIKPNETVLTAFPYRPHSSLLDFLKGEPRVLGATQILLALIIVGFGTIFALNYIGF
SQRLPLVVLTGYPFWGALIGQGVTGMNVISSLVAITGITFTILSYRHQDKYCQMPSFEEICVFSRTLFIG
ILLILLIISIAELSISVTIASFRSKCWTQSDEVLFFLPSDVTQNSEQPAPEENDQLQFVLQEEFSSDDST
TNAQSVIFGGYAFFKLTLSRSPLVSQPGNKGREFVPDEQKQSILPSPKFSEEEIEPLPPTLEKKPSENMS
IQLDSTFKQMKDEDLQSAIVQPSQMQTKLLQDQAASLQVFPSHSALKLEDISPEDLPSQALPVEGLSEQT
MPSKSTSSHVKQSSNLTANDLPPQGILSQDTSSQDMLFHDMTSQDMQSLDMLSQDTPSHAMPPQDIPSQD
MLSQALSAHAILPEASTSHIVQFPEIQHLLQQPPDLQPENTEPQNQQILQMSYQDIRSEVMEETKEWKSE
EELHRRKSSRRHSLNQQTKALQYLRRHSLDVQAKGQKSSKRHSLDQQSKGWQSPKQKSLDQQIKDWLSPK
RHSVDKQAQLNQTKEQLPDQQAEDQQAKGEQYPEGQSKDGQVKDQQTDKEQNSKKQTQDQQTEDQPAQEK
KSPKGQFQNVQAEGQQAQVEKVPKLLCQDSESQIQQYQFWQFHKGNLQAGQPRTVNLLAKNPLTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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